Advanced SearchSearch Tips
The 3rd Generation Genome Map of the Korean Cattle (Hanwoo)
facebook(new window)  Pirnt(new window) E-mail(new window) Excel Download
 Title & Authors
The 3rd Generation Genome Map of the Korean Cattle (Hanwoo)
Lee, Yong-Seok; Choi, In-Ho;
  PDF(new window)
Recently, the generation genome map of the Korean cattle (Hanwoo) has been constructed by comparison of the nucleotide sequence of the Korean cattle BAC clones with whole genome sequence of the bovine data-base (B_tau 2.1 build). The objective of this study was to update the generation genome map of the Korean cattle using the similar approach. The nucleotide sequence of the Korean cattle BAC clones utilized in the construction of the generation map was compared with the newly released bovine data-base (B_tau 3.1 build) to generate the generation map. While, 5,105 BAC clones were localized on bovine chromosome in the generation map, a total of 9,595 BAC clones, which spans about 37.27% of the bovine chromosome after eliminating the overlapping sequence among the clones, have been mapped on the bovine chromosome in the generation map. Further analysis of the nucleotide sequence of the BAC clones will allow us to develop map and facilitate to pinpoint the genes that are important for the improvement of the performance in this cattle breed.
Korean cattle (Hanwoo);BAC End Sequence (BES);chromosome map;
 Cited by
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. and Lipman, D. J. 1990. Basic local alignment search tool. J Mol Biol. 215:403-410.

Band, M. R., Larson, J. H., Rebeiz, M., Green, C. A., Heyen, D. W., Donovan, J., Windish, R., Steining, C., Mahyuddin, P., Womack, J. E. and Lewin, H. A. 2000. An ordered comparative map of the cattle and human genomes. Genome Res. 10:1359-1368. crossref(new window)

Barendse, W., Vaiman, D., Kemp, S. J., Sugimoto, Y., Armitage, S. M., Williams, J. L., Sun, H. S., Eggen, A., Agaba, M., Aleyasin, S. A., Band, M., Bishop, M. D., Buitkamp, J., Byrne, K., Collins, F., Cooper, L., Coppettiers, W., Denys, B., Drinkwater, R. D., Easterday, K., Elduque, C., Ennis, S., Erhardt, G., Ferretti, L., Flavin, N., Gao, Q., Georges, M., Gurung, R., Harlizius, B., Hawkins, G., Hetzel, J., Hirano, T., Hulme, D., Jorgensen, C., Kessler, M., Kirkpatrick, B. W., Konfortov, B., Kostia, S., Kuhn, C., Lenstra, J. A., Leveziel, H., Lewin, H. A., Leyhe, B., Lil, L., Burriel, I. M., McGraw, R. A., Miller, J. R., Moody, D. E., Moore, S. S., Nakane, S., Nijman, I. J., Olsaker, I., Pomp, D., Rando, A., Ron, M., Shalom, A., Teale, A. J., Thieven, U., Urquhart, B. G. D., Vage, D.-I., Weghe, A. V. d., Varvio, S., Velmala, R., Vilkki, J., Weikard, R., Woodside, C., Womack, J. E., Zanotti, M. and Zaragoza, P. 1997. A medium-density genetic linkage map of the bovine genome Mammalian Genome. 8:21-28. crossref(new window)

Birnboim, H. C. and Doly, J. 1979. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7:1513-1523. crossref(new window)

Chae, S. H., Kim, J. W., Choi, J., Larkin, D. M., Everts-Van Der Wind, A., Park, H. S., Yeo, J. S. and Choi, I. 2007. Chromosomal localization of Korean cattle (Hanwoo) BAC clones via BAC end sequence analysis. Asian-australasian journal of animal sciences. 20:316-327.

Choi, J. M., Chae, S. H., S. W., K., Choi, D. S., Lee, Y. S., Park, H. S., Yeo, J. S. and Choi, I. 2007. Localization of the 5,105 Hanwoo (Korean cattle) BAC clones on Bovine Chromosome by Analyzing BAC End Sequences (BESs) of the 21,024 clones. Asian-australasian journal of animal sciences. 20:1636-1650.

Choi, S. H., Kim, I. C., Kim, D. S., Kim, D. W., Chae, S. H., Choi, H. H., Choi, I., Yeo, J. S., Song, M. N. and Park, H. S. 2006. Comparative genomic organization of the human and bovine PRNP locus. Genomics. 87:598-607. crossref(new window)

Everts-van der Wind, A., Kata, S. R., Band, M. R., Rebeiz, M., Larkin, D. M., Everts, R. E., Green, C. A., Liu, L., Natarajan, S., Goldammer, T., Lee, J. H., McKay, S., Womack, J. E. and Lewin, H. A. 2004. A 1463 gene cattle-human comparative map with anchor points defined by human genome sequence coordinates. Genome Res. 14:1424-1437. crossref(new window)

Ewing, B. and Green, P. 1998. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8:186-194.

Ewing, B., Hillier, L., Wendl, M. C. and Green, P. 1998. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8:175-185.

Ihara, N., Takasuga, A., Mizoshita, K., Takeda, H., Sugimoto, M., Mizoguchi, Y., Hirano, T., Itoh, T., Watanabe, T., Reed, K. M., Snelling, W. M., Kappes, S. M., Beattie, C. W., Bennett, G. L. and Sugimoto, Y. 2004. A comprehensive genetic map of the cattle genome based on 3802 microsatellites. Genome Res. 14:1987-1998. crossref(new window)

Itoh, T., Watanabe, T., Ihara, N., Mariani, P., Beattie, C. W., Sugimoto, Y. and Takasuga, A. 2005. A comprehensive radiation hybrid map of the bovine genome comprising 5593 loci. Genomics. 85:413-424. crossref(new window)

Jurka, J., Kapitonov, V. V., Pavlicek, A., Klonowski, P., Kohany, O. and Walichiewicz, J. 2005. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 110:462-467. crossref(new window)

Kelley, J. M., Field, C. E., Craven, M. B., Bocskai, D., Kim, U. J., Rounsley, S. D. and Adams, M. D. 1999. High throughput direct end sequencing of BAC clones. Nucleic Acids Res. 27:1539-1546. crossref(new window)

Kim, U. J., W., B. B., T., S., V., M., C., B., L., K. H., I., S. M. and H., S. 1996. Construction and characterization of a human bacterial artificial chromosome library. Genomics. 34-2:213-218.

Larkin, D. M., Everts-van der Wind, A., Rebeiz, M., Schweitzer, P. A., Bachman, S., Green, C., Wright, C. L., Campos, E. J., Benson, L. D., Edwards, J., Liu, L., Osoegawa, K., Womack, J. E., de Jong, P. J. and Lewin, H. A. 2003. A cattle-human comparative map built with cattle BAC-ends and human genome sequence. Genome Res. 13:1966-1972.

Womack, J. E., Johnson, J. S., Owens, E. K., Rexroad, C. E., 3rd, Schlapfer, J. and Yang, Y. P. 1997. A whole-genome radiation hybrid panel for bovine gene mapping. Mamm Genome. 8:854-856. crossref(new window)

Yu, S. L., Kim, J. E., Chung, H. J., Jung, K. C., Lee, Y. J., Yoon, D. H., Lee, S. H., Choi, I., Bottema, C. D., Sang, B. C. and Lee, J. H. 2005. Molecular cloning and characterization of bovine PRKAG3 gene: structure, expression and single nucleotide polymorphism detection. J. Anim Breed Genet. 122:294-301. crossref(new window)