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Genetic Analysis of Three River Populations of Catla catla (HAMILTON) Using Randomly Amplified Polymorphic DNA Markers
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 Title & Authors
Genetic Analysis of Three River Populations of Catla catla (HAMILTON) Using Randomly Amplified Polymorphic DNA Markers
Islam, M.S.; Ahmed, A.S.I.; Azam, M.S.; Alam, M.S.;
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The genetic variations in three major river populations viz. the Halda, the Jamuna and the Padma of the Indian major carp, Catla catla were analyzed by Random Amplified Polymorphic DNA (RAPD) markers. Four decamer primers were used for amplifying DNA of 10 individuals from each population. The proportion of polymorphic loci and the gene diversity estimates were 59.4 and 0.20 for the Halda, 37.5 and 0.14 for the Jamuna and 46.9 and 0.16 for the Padma populations respectively indicating the existence of a relatively high level of genetic variation in the Halda river population. The inter-population similarity indices, gene flow and genetic distance values indicated that the Jamuna-Padma population pair of catla was genetically closer than the Halda-Jamuna and the Halda-Padma population pairs in compliance with the geographical distances among them. The coefficient of gene differentiation (=0.13) reflects some degree of genetic differentiation among three populations of catla studied. The data suggest that the RAPD technique could be used to discriminate different river populations of catla.
RAPD;Polymorphic Loci;Genetic Variation;Catla catla;
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Alam, M. S., A. Popplewell and N. Maclean. 1996. Germline transmission and expression of a lacZ containing transgene in tilapia (Oreochromis niloticus). Transgenic Res. 5:87-95.

Appannavar, M. M., M. G. Govindaiah and K. P. Ramesha. 2003. Genetic distance study among deoni breed of cattle using random amplified DNA markers. Asian-Aust. J. Anim. Sci. 16(3):315-319.

Barman, H. K., A. Barat, B. M. Yadav, S. Banerjee, P. K. Meher, P. V. G. K. Reddy and R. K. Jana. 2003. Genetic variation between four species of Indian major carps as revealed by random amplified polymorphic DNA assay. Aquaculture 217:115-123.

Bielawski, J. P. and D. E. Pumo. 1997. Randomly amplified polymorphic DNA (RAPD) analysis of Atlantic Cost striped bass. Heredity 78:32-40.

Bowditch, B. M., D. G. Albright, J. G. K. Williams and M. J. Braun. 1993. Use of randomly amplified polymorphic DNA markers in comparative genome studies. Methods Enzymol. 224:294-309.

DoF. 2002. Saranika, Fish Weekly Compendium, Department of Fisheries, Ministry of Fisheries and Livestock, Peoples Republic of Bangladesh.

DoF. 2003. Fish-Fort-night Compendium, Department of Fisheries, Ministry of Fisheries and Livestock, Peoples Republic of Bangladesh.

Huang, M-C., Y-M. Horng, H-L. Huang, Y-L. Sin and M-J. Chen. 2003. RAPD fingerprinting for the species identification of animals. Asian-Aust. J. Anim. Sci. 16(10):1406-1410.

Lynch, M. 1991. Analysis of population genetic structure by DNA fingerprinting. In: (Ed. T. Burke, G. Dolf, A. J. Jeffreys and R. Wolf). DNA fingerprinting Approaches and Applications. Basel, Switzerland, pp. 113-126.

McConnell, S. K. J., J. Leamon, D. O. F. Skibinski and G. C. Mair, 2001. Microsatellite markers from the Indian major carp species, Catla catla. Mol. Ecol. Notes. 1:115-116 crossref(new window)

Naish, K. A. and D. O. F. Skibinski. 1998. Tetranucleotide microsatellite loci for Indian major carp. J. Fish. Biol. 53:886-889.

Nash, J. H. E. 1991. DNAfrag Version 3.03. Institute for Biological Sciences, National Research Council of Canada, Ottawa, Ontario, Canada.

Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA. 70:3321-3323.

Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590.

Tassanakajon, A., S. Pongsomboon, V. Rimphanitchayakit, P. Jarayabhand and V. Boonsaeng. 1997. Random amplified polymorphic DNA (RAPD) markers for determination of genetic variation in wild populations of black tiger prawns (Penaeus monodon) in Thailand. Mol. Mar. Biol. Biotechnol. 6:110-115.

Welsh, J. and M. McClelland. 1990. Fingerprinting genomes using PCR with arbitary primers. Nucleic Acids Res. 18:7213-7218.

Williams, J. G. K., A. R. Kubelik, K. J. Livak, J. A. Rafalski and S. V. Tingey. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18:6531-6535.

Wright, S. 1943. Isolation by distance. Genetics 28:114-138.

Yeh, F. C., R. C. Yang and T. Boyle. 1999. POPGENE VERSION 1.31: Microsoft Window-based Freeware for Population Genetic Analysis.${\sim}$fyeh/