JOURNAL BROWSE
Search
Advanced SearchSearch Tips
Mitochondrial DNA Diversity and Origin of Red Chittagong Cattle
facebook(new window)  Pirnt(new window) E-mail(new window) Excel Download
 Title & Authors
Mitochondrial DNA Diversity and Origin of Red Chittagong Cattle
Bhuiyan, M.S.A.; Bhuiyan, A.K.F.H.; Yoon, D.H.; Jeon, J.T.; Park, C.S.; Lee, J.H.;
  PDF(new window)
 Abstract
To determine the origin and genetic diversity of Red Chittagong (RC) cattle in Bangladesh, we analyzed mitochondrial DNA displacement loop (D-loop) sequences of 48 samples along with 22 previously published sequences from Bos indicus and Bos taurus breeds. Twenty five haplotypes were identified in RC cattle that were defined by 44 polymorphic sites and nucleotide diversity was . The estimated sequence divergence times between RC and other zebu cattle breeds studied ranged between 22,700-26,900 years before present (YBP) which, it is suggested, predate domestication of RC cattle. Furthermore, it is assumed that introgressions have occurred in this breed mainly from Indian zebu breeds in the recent millennia. The phylogenetic studies showed RC cattle clustered with Bos indicus lineage with two distinct haplogroups representing high genetic variability of this breed. These findings can be used for designing proper breeding and conservation strategies for RC cattle in Bangladesh.
 Keywords
Red Chittagong Cattle;Mitochondrial DNA;D-loop;Diversity;Phylogenetic Analysis;
 Language
English
 Cited by
1.
Genetic Variability of mtDNA D-loop Region in Korean Native Chickens,;;;;;

한국가금학회지, 2009. vol.36. 4, pp.323-328 crossref(new window)
2.
Genome-wide Single Nucleotide Polymorphism Analyses Reveal Genetic Diversity and Structure of Wild and Domestic Cattle in Bangladesh,;;;;;;

Asian-Australasian Journal of Animal Sciences, 2014. vol.27. 10, pp.1381-1386 crossref(new window)
 References
1.
Ahmed, Z. and T. S. Islam. 1987. Cattle breeding program through Artificial Insemination in Bangladesh. Artificial Insemination Extension Project Report. CCBS. Dhaka. Bangladesh.

2.
Bradley, D. G., D. E. MacHugh, P. Cunningham and R. T. Loftus. 1996. Mitochondrial diversity and the origins of African and European cattle. Proc. Natl. Acad. Sci. USA. 93:5131-5135

3.
Bradley, D. G., R. T. Loftus, E. P. Cunningham and D. E. MacHugh. 1998. Genetics and domestic cattle origins. Evol. Anthropol. 6:79-86. crossref(new window)

4.
Brown, W. M., M. George and A. C. Wilson. 1979. Rapid evolution of animal mitochondrial DNA. Proc. Natl. Acad. Sci. USA. 76:1967-1971.

5.
DLS (Directorate of Livestock Services). 2001. Status of existing cattle AI program and its improvement. Report of the Government of the People's Republic of Bangladesh.15 pp

6.
Excoffier, L., G. Laval and S. Schneider. 2006. Arlequin ver 3.01: An integrated software package for population genetics data analysis. University of Berne. Switzerland

7.
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791. crossref(new window)

8.
Habib, M. A., A. K. F. H. Bhuiyan, M. S. A. Bhuiyan and A. A. Khan. 2003. Performance of Red Chittagong cattle in Bangladesh Agricultural University dairy farm. Bang. J. Anim. Sci. 32:101-108.

9.
Hall, T. 1999. Bioedit: a biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acid Symp. Series. 41

10.
Henkes, L. E., W. A. Silva Jr., J. C. F. Moraes and T. A. Weimer. 2005. Mitochondrial control region genetic diversity and maternal ancestry of a Brangus-Ibage cattle populations. Genet. Mol. Biol. 28:60-66. crossref(new window)

11.
Hossain, M. M., M. S. A. Bhuiyan, A. K. F. H. Bhuiyan and O. Hanotte, 2005. Red Chittagong-indigenous cattle genetic resource with promise in Bangladesh. Proceedings of the AHAT/BSAS international conference on "Integrating Livestock-Crop Systems to Meet the Challenges of Globalization" held in Khon Kaen, Thailand, during 14-18 November, 2005. Br. Soc. Anim. Sci. 2. P-T82.

12.
Kim, K. S., J. S. Yeo and C. B. Choi. 2002. Genetic diversity of north-east Asian cattle based on microsatellite data. Anim. Genet. 33:201-204. crossref(new window)

13.
Kumar, P., A. R. Freeman, R. T. Loftus, C. Gaillard, D. Q. Fuller and D. G. Bradley. 2003. Admixture analysis of South Asian cattle. Heredity 91:43-50. crossref(new window)

14.
Kumar, S., K. Tamura and M. Nei. 2004. MEGA 3.1: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinformatics 5:150-163. crossref(new window)

15.
Lai, S. J., Y. P. Liu, Y. X. Liu, X. W. Li and Y. G. Yao. 2006. Genetic diversity and origin of Chinese cattle revealed by mtDNA D-loop sequence variation. Mol. Phyl. Evol. 38:146-154. crossref(new window)

16.
Lei, C. Z., W. Zhang, H. Chen, F. Lu, Q. L. Ge, R.Y. Liu, R. H. Dang, Y. Y. Yao, L. B. Yao, Z. F. Lu and Z. L. Zhao. 2007. Two Maternal Lineages Revealed by Mitochondrial DNA Dloop Sequences in Chinese Native Water Buffaloes (Bubalus bubalis). Asian-Aust. J. Anim. Sci. 20(4):471-476.

17.
Lee, Y. J., M. S. A. Bhuiyan, H. J. Chung, W. Y. Jung, K. D. Choi, B. G. Jang, W. K. Paek, J. T. Jeon, C. S. Park and J. H. Lee. 2007. Mitochondrial DNA Diversity of Korean Ogol Chicken. Asian-Aust. J. Anim. Sci. 20(4):477-481

18.
Liu, Z. G., C. Z. Lei, J. Luo, C. Ding, G. H. Chen, H. Chang, K. H. Wang, X. X. Liu, X. Y. Zhang, X. J. Xiao and S. L. Wu. 2004. Genetic variability of mtDNA sequences in Chinese native chicken breeds. Asian-Aust. J. Anim. Sci. 17:903-909.

19.
Loftus, R. T., D. E. MacHugh, D. G. Bradley, P. M. Sharp and P. Cunningham. 1994. Evidence for two independent domestications of cattle. Proc. Natl. Acad. Sci. USA. 91:2757-2761.

20.
Mannen, H., M. Kohno, Y. Nagata, S. Tsuji, D. G. Bradley, J. S. Yeo, D. Nyamsamba, Y. Zagdsuren, M. Yokohama, K. Nomura and T. Amano. 2004. Independent mitochondrial origin and historical genetic differentiation in north eastern Asian cattle. Mol. Phyl. Evol. 32:539-544. crossref(new window)

21.
Mannen, H., S. Tsuji, R. T. Loftus and D. G. Bradley. 1998. Mitochondrial DNA variation and evolution of Japanese black cattle (Bos taurus). Genet. 150:1169-1175.

22.
Malau-Aduli, A. E. O., A. Nishimura-Abe, T. Niibayashi, Y. Yasuda, T. Kojima, S. Abe, K. Oshima, K. Hasegawa and M. Komatsu. 2004. Mitochondrial DNA Polymorphism, Maternal Lineage and Correlations with Postnatal Growth of Japanese Black Beef Cattle to Yearling Age. Asian-Aust. J. Anim. Sci. 17(11):1484-1490.

23.
Meadow, R. H. 1993. Animal domestication in the Middle East: a revised view from the Eastern Margin. In: Harappan civilization (Ed. G. Possehl). Oxford & IBH. New Delhi. pp. 295-320.

24.
Nei, M. 1987. Molecular Evolutionary Genetics. Columbia University Press. New York.

25.
Odahara, S., H. J. Chung, S. H. Choi, S. L. Yu, S. Sasazaki, H. Mannen, C. S. Park and J. H. Lee. 2006. Mitochondrial DNA diversity of Korean native goats. Asian-Aust. J. Anim. Sci. 19:482-485.

26.
Parsons, T. J., D. S. Muniec, K. Sullivan, N. Woodyatt and R. A. Greiner. 1997. A high observed substitution rate in the human mitochondrial DNA control region. Nat. Genet. 15:363-368. crossref(new window)

27.
Raymond, M. and F. Rousset. 1995. An exact test for population differentiation. Evolution. 49:1280-1283. crossref(new window)

28.
Slatkin, M. 1995. A measure of population subdivision based on microsatellite allele frequencies. Genet. 139:457-462.

29.
Tamura, K. and M. Nei. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:512-526.

30.
Thompson, J. D., D. G. Higgins and T. J. Gibson. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680. crossref(new window)

31.
Troy, C. S., D. E. Machugh, J. F. Bailey, D. A. Magee, R. T. Loftus, P. Cunningham, A. T. Chamberlain, B. C. Sykes and D. G. Bradley. 2001. Genetic evidence for Near-Eastern origins of European cattle. Nature. 410:1088-1091. crossref(new window)

32.
Vasconcellos, L. P. M., D. T. Talhari, A. P. Pereira, L. L. Coutinho and L. C. A. Regitano. 2003. Genetic characterization of Aberdeen Angus cattle using molecular markers. Genet. Mol. Biol. 26(2):133-137. crossref(new window)

33.
Weir, B. S. 1996. Genetic Data Analysis II: Methods for Discrete Population Genetic Data. Sinauer Assoc. Inc. Sunderland, MA, USA.

34.
Wendorf, F. and R. Schild. 1994. Are the early Holocene cattle in the Eastern Sahara domestic or wild? Evol. Anthropol. 3:118-128. crossref(new window)

35.
Yoon, D. H., H. K. Lee, S. J. Oh, K. C. Hong, G. J. Jeon, H. S. Kong and J. H. Lee. 2005. Genetic Relationships of Cattle Breeds Assessed by PCR-RFLP of the Bovine Mitochondrial DNA D-loop Region. Asian-Aust. J. Anim. Sci. 18(10):1368-1374.