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An Integrated Genomic Resource Based on Korean Cattle (Hanwoo) Transcripts
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 Title & Authors
An Integrated Genomic Resource Based on Korean Cattle (Hanwoo) Transcripts
Lim, Da-Jeong; Cho, Yong-Min; Lee, Seung-Hwan; Sung, Sam-Sun; Nam, Jung-Rye; Yoon, Du-Hak; Shin, Youn-Hee; Park, Hye-Sun; Kim, Hee-Bal;
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We have created a Bovine Genome Database, an integrated genomic resource for Bos taurus, by merging bovine data from various databases and our own data. We produced 55,213 Korean cattle (Hanwoo) ESTs from cDNA libraries from three tissues. We concentrated on genomic information based on Hanwoo transcripts and provided user-friendly search interfaces within the Bovine Genome Database. The genome browser supported alignment results for the various types of data: Hanwoo EST, consensus sequence, human gene, and predicted bovine genes. The database also provides transcript data information, gene annotation, genomic location, sequence and tissue distribution. Users can also explore bovine disease genes based on comparative mapping of homologous genes and can conduct searches centered on genes within user-selected quantitative trait loci (QTL) regions. The Bovine Genome Database can be accessed at
Korean Cattle (Hanwoo);Bovine;EST;Transcript;Genome Database;
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한국축산식품학회지, 2011. vol.31. 4, pp.506-512 crossref(new window)
A Challenging Study to Identify Target Proteins by a Proteomics Approach and Their Validation by Raising Polyclonal Antibody, Korean Journal for Food Science of Animal Resources, 2011, 31, 4, 506  crossref(new windwow)
Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller and D. J. Lipman. 1997. Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Res. 25(17):3389-3402. crossref(new window)

Audic, S. and J. M. Claverie. 1997. The significance of digital gene expression profiles. Genome. Res. 7(10):986-995.

Barendse, W., S. M. Armitage, L. M. Kossarek, A. Shalom, B. W.Kirkpatrick, A. M. Ryan, D. Clayton, L. Li, H. L. Neibergs and N. Zhang. 1994. A genetic linkage map of the bovine genome. Nat. Genet. 6(3):227-235. crossref(new window)

Baumann, R. G., R. L. Baldwin, C. Pt. Van Tassell, T. S.Sonstegard and L. K. Matukumalli. 2005. Characterization of a normalized cDNA library from bovine intestinal muscle and epithelial tissues. Anim. Biotechnol. 16(1):17-29. crossref(new window)

Bishop, M. D., S. M. Kappes, J. W. Keele, R. T. Stone, S. L.Sunden, G. A. Hawkins, S. S. Toldo, R. Fries, M. D. Grosz and J. Yoo. 1994. A genetic linkage map for cattle. Genetics 136(2):619-639.

Goffinet, B., S. Gerber. 2000. Quantitative trait loci: a metaanalysis. Genetics 155(1):463-473.

Grisart, B., W. Coppieters, F. Farnir, L. Karim, C. Ford, P. Berzi, N.Cambisano, M. Mni, S. Reid and P. Simon. 2002. Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Res. 12(2):222-231. crossref(new window)

Hansen, C., A. Fu, Y. Meng, E. Okine, R. Hawken, W. Barris, C. Li and S. S. Moore. 2004. Gene expression profiling of the bovine gastrointestinal tract. Genome 47(4):639-649. crossref(new window)

Hu, J., C. Mungall, A. Law, R. Papworth, J. P. Nelson, A. Brown, I.Simpson, S. Leckie, D. W. Burt and A. L. Hillyard. 2001. The ARKdb: genome databases for farmed and other animals. Nucleic Acids Res. 29(1):106-110. crossref(new window)

Kent, W. J. 2002. BLAT--the BLAST-like alignment tool. Genome. Res. 12(4):656-664. crossref(new window)

Lim, Dajeong BM-j, Cho Yong-Min, Yoon Doo-hak, Lee Seung-Hwan, Shin Younhee and Im Seok-ki. 2009. Functional analysis of expressed sequence tags from Hanwoo (Korean cattle) cDNA libraries. Journal of Animal Science and Technology 51:1-8. crossref(new window)

Panzitta, F., A. Caprera, I. Merelli, L. Milanesi, J. L. Williams, B. Lazzari and A. Stella. 2008. Mining the bovine genome with the “Bovine SNP Retriever”. J. Hered. 99(6):696-698. crossref(new window)

Stein, L. D., C. Mungall, S. Shu, M. Caudy, M. Mangone, A. Day,E. Nickerson, J. E. Stajich, T. W. Harris, A. Arva. 2002. The generic genome browser: a building block for a model organism system database. Genome. Res. 12(10):1599-1610. crossref(new window)

Wall, D. P., H. B. Fraser, A. E. Hirsh. 2003. Detecting putative orthologs. Bioinformatics 19(13):1710-1711. crossref(new window)

Womack, J. E., J. S. Johnson, E. K. Owens, C. E. Rexroad, 3rd, J. Schlapfer, Y. P. Yang.1997. A whole-genome radiation hybrid panel for bovine gene mapping. Mamm. Genome. 8(11):854-856. crossref(new window)