Advanced SearchSearch Tips
Analysis of genetic divergence according to each mitochondrial DNA region of Haliotis discus hannai
facebook(new window)  Pirnt(new window) E-mail(new window) Excel Download
  • Journal title : The Korean Journal of Malacology
  • Volume 29, Issue 4,  2013, pp.335-341
  • Publisher : The Malacological Society of Korea
  • DOI : 10.9710/kjm.2013.29.4.335
 Title & Authors
Analysis of genetic divergence according to each mitochondrial DNA region of Haliotis discus hannai
Park, Choul-Ji; Nam, Won Sick; Lee, Jeong-Ho; Noh, Jae Koo; Kim, Hyun Chul; Park, Jong Won; Hwang, In Jun; Kim, Sung Yeon;
  PDF(new window)
The seven mitochondrial DNA regions (ND2, ND5, ND4, ND4L, ND6, ND1 and 12SrRNA) of Haliotis discus hannai were examined to estimate the availability as a genetic marker for the study of population genetic. The region with the highest genetic variation was ND4 (Haplotype diversity = 1.0000, Nucleotide diversity = 0.0108). On the other hand, ND2 and ND1 regions have significantly appeared genetic divergence between clusters (divergence of 90% and 87%). Also, pairwise between clusters within ND2 and ND1 regions showed high values; 0.4061 (P = 0.0000), 0.4805 (P = 0.0000) respectively. Therefore we can infer that it is the most efficient and accurate way to analyze the region of ND4 with the highest variation in addition to the regions of ND2 and ND1, which formed clusters with high bootstrap value, for study of population genetic structure in this species.
mitochondrial DNA;genetic diversity;Haliotis discus hannai;
 Cited by
Mitochondrial DNA와 microsatellite marker 분석을 통한 한국과 일본에 서식하는 5 지역의 도루묵(Arctoscopus japonicas)에 대한 유전학적 유연관계 분석,김은미;강현숙;강정하;김동균;안철민;이해원;박중연;

생명과학회지, 2015. vol.25. 11, pp.1204-1213 crossref(new window)
Genetic Relationships of Sandfish (Arctoscopus japonicas) from Five Different Areas of Korea and Japan Based on Mitochondrial DNA and Microsatellite Analyses, Journal of Life Science, 2015, 25, 11, 1204  crossref(new windwow)
Ben, T.M., Lyndal J.K., Joanne M.M., Eliza S.J. and Peter J.H. (2005) Mitochondrial DNA Sequence and Gene Organization in the Australian Blacklip Abalone Haliotis rubra (Leach). Marine Biotechnology, 7: 645-658. crossref(new window)

Brown, W.M., George, M.J.R. and Wilson, A.C. (1979) Rapid evolution of animal mitochondrial DNA. Proceedings of the National Academy of Sciences of the United States of America, 76: 1967-1971. crossref(new window)

Brykov, V.A., Polyakova, N., Skurikhina, L.A. and Kukleysky, A.D. (1996) Geographical and temporal mitochondrial DNA variability in populations of pink salmon. Journal of Fish Biology, 48: 899-909 crossref(new window)

Conod, N., Bartlett, J.P., Evans, B.S. and Elliott, N.G. (2002) Comparison of mitochondrial and nuclear DNA analyses of population structure in the blacklip abalone Haliotis rubra Leach. Marine and Freshwater Research, 53: 711-718. crossref(new window)

Degnan, S.A., Imron, Geiger D.L. and Degnan, B.M. (2006) Evolution in temperate and tropical seas: disparate patterns in southern hemisphere abalone (Mollusca: Vetigastropoda: Haliotidae). Molecular Phylogenetics and Evolution, 41: 249-256. crossref(new window)

Duran, S., Palacin, C., Becerro, M.A., Turon, X. and Giribet, G. (2004) Genetic diversity and population structure of the commercially harvested sea urchin Paracentrotus lividus (Echinodermata, Echinoidea). Molecular Ecology, 13: 3317-3328. crossref(new window)

Elliott, N.G., Bartlett, J., Evans, B. and Sweijd, N.A. (2002) Identification of Southern Hemisphere abalone (Haliotis) species by PCR-RFLP analysis of mitochondrial DNA. Journal of Shellfish Research, 21: 219-226.

Estes, J.A., Lindberg, D.R. and Wray, C. (2005) Evolution of large body size in abalones (Haliotis) : patterns and implications. Paleobiology, 31: 591-606. crossref(new window)

Excoffier, L., Laval, G. and Schneider, S. (2006) Arlequin ver 3.11: An integrated software package for population genetics data analysis Computational and Molecular Population Genetics Lab (CMPG), Institute of Zoology University of Berne, Switzerland.

Gruenthal, K.M. and Burton, R.S. (2008) Genetic structure of natural populations of the California black abalone (Haliotis cracherodii Leach, 1814), a candidate for endangered species status. Journal of Experimental Marine Biology and Ecology, 355: 47-58. crossref(new window)

Hamm, D.E. and Burton, R.S. (2000) Population genetics of black abalone, Haliotis cracherodii, along the central California coast. Journal of Experimental Marine Biology and Ecology, 254: 235-247. crossref(new window)

Imron, Jeffrey, B., Hale, P., Degnan, B.M. and Degnan, S.M. (2007) Pleistocene isolation and recent gene flow in Haliotis asinina, an Indo-Pacific vetigastropod with limited dispersal capacity. Molecular Ecology, 16: 289-304.

Kamarudin, K.R., Hashim, R. and Usup, G. (2010) Phylogeny of sea cucumber (Echinodermata: Holothuroidea) as inferred from 16S mitochondrial rRNA gene sequences. Sains Malaysiana, 39(2): 209-218.

KNSO (2013) KOSIS Statistical DB. Korea National Statistical Office, Daefeon, Korea

Lansman, R., Shade, R.O., Shapira, F. and Avise, J.C., (1981) The use of restriction endonucleases to measure mitochondrial DNA sequence relatedness in natural populations. Journal of Molecular Evolution, 17: 214-226. crossref(new window)

Lee, Y.H. (2003) Molecular pylogenies and divergence times of sea urchin species of Strongylocentrotidae, Echinoida. Molecular Biology and Evolution, 20: 1211-1221. crossref(new window)

Lessios, H.A., Kane, J. and Robertson, D.R. (2003) Phylogeography of the pantropical sea urchin Tripneustes: contrasting patterns of population structure between oceans. Evolution, 57: 2026-2036. crossref(new window)

Lindberg, D.R. (1992) Evolution, distribution and systematics of Haliotidae. In: Abalone of the Word: Biology Fisheries and Culture. (ed. by Shepherd, M.J., Tegner, S.A., Guzman del Proo, S.A.). pp. 3-18. Blackwell Scientific. London.

Margaret, W., Marie, L.H., David, R.S. and Neil, J.G. (2011) Low to moderate levels of genetic differentiation detected across the distribution of the New Zealand abalone, Haliotis iris. Marine Biology, 158: 1417-1429. crossref(new window)

Maynard, B.T., Kerr, L.J., McKiernan, J.M., Jansen, E.S. and Hanna, P.J. (2005) Mitochondrial DNA sequence and gene organization in Australian backup abalone Haliotis rubra (leach). Marine Biotechnology, 7: 645-658. crossref(new window)

Moritz, C., Dowlin, T.E. and Brown, W.M. (1987) Evolution of animal mitochondrial DNA: relevance for population biology and systematics. Annual Review of Ecology and Systematics, 18: 269-92. crossref(new window)

Saitou, N. and Nei, M. (1987) The Neighbor-joining Method: A new method for reconstructing phylogenetic trees1. Molecular Biology and Evolution, 4(4): 406-425.

Sekino, M., Sato, S., Hong, J.S. and Li, Q. (2012) Contrasting pattern of mitochondrial population diversity between an estuarine bivalve, the Kumamoto oyster Crassostrea sikamea, an the closely related Pacific oyster C. gigas. Marine biology, 159: 2757-2776. crossref(new window)

Sweijd, N.A., Bowie, R.C.K., Lopata, A.L., Marinaki, A.M., Harley, E.H. and Cook, P.A. (1998) A PCR technique for forensic, species-level identification of abalone tissue. Journal of Shellfish Research, 17: 889-895.

Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. and Kumar, S. (2011) MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology and Evolution, 28: 2731-2739. crossref(new window)

Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22: 4673-4680. crossref(new window)

Van Wormhoudt, A., Le Bras, Y. and Huchette, S. (2009) Haliotis marmorata from Senegal; a sister species of Haliotis tuberculata: morphological and molecular evidence. Biochemical Systematics and Ecology, 37: 747-755. crossref(new window)

Van Wormhoudt, A., Roussel, V., Courtois, G. and Huchette, S. (2011) Mitochondrial DNA Introgression in the European Abalone Haliotis tuberculata tuberculata: Evidence for Experimental mtDNA Paternal Inheritance and a Natural Hybrid Sequence. Marine Biotechnology, 13: 563-574. crossref(new window)

White, P.S. and Densmore, L.D.III. (1992) Mitochondrial DNA isolation. In: Molecular Genetic Analysis of Populations (ed. by Hoelzel, A.R.). pp. 29-58. University Publishers, Oxford.

Xin, Y., Ren, J. and Liu, X. (2011) Mitogenome of the small abalone Haliotis diversicolor Reeve and phylogenetic analysis within Gastropoda. Marine Genomics, 4: 253-262. crossref(new window)