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The Study of Genetic Diversity and Population Structure of the Korean Fleshy Shrimp, Fenneropenaeus chinensis, Using Newly Developed Microsatellite Markers
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  • Journal title : Journal of Life Science
  • Volume 25, Issue 12,  2015, pp.1347-1353
  • Publisher : Korean Society of Life Science
  • DOI : 10.5352/JLS.2015.25.12.1347
 Title & Authors
The Study of Genetic Diversity and Population Structure of the Korean Fleshy Shrimp, Fenneropenaeus chinensis, Using Newly Developed Microsatellite Markers
Shin, Eun-Ha; Kong, Hee Jeong; Nam, Bo-Hye; Kim, Young-Ok; Kim, Bong-Seok; Kim, Dong-Gyun; An, Cheul Min; Jung, Hyungtaek; Kim, Woo-Jin;
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 Abstract
The fleshy shrimp, Fenneropenaeus chinensis, is the family of Penaeidae and one of the most economically important marine culture species in Korea. However, its genetic characteristics have never been studied. In this study, a total of 240 wild F. chinensis individuals were collected from four locations as follows: Narodo (NRD, n
 Keywords
Fleshy shrimp;Fenneropenaeus chinensis;genetic variability;microsatellite loci;population structure;
 Language
English
 Cited by
 References
1.
Castro, J., Bouza, C., Presa, P., Pino-Querido, A., Riaza, A., Ferreiro, I., Sanchez, L. and Martines, P. 2004. Potential sources of error in parentage assessment of turbot (Scophthalmus maximus) using microsatellite loci. Aquaculture 242, 119-135. crossref(new window)

2.
Cavalli-Sforza, L. L. and Edwards, A. W. 1967. Phylogenetic analysis. Models and estimation procedures. Am. J. Hum. Genet. 19, 233-257.

3.
Deng, J. Y., Kang, Y. D. and Jiang, Y. W. 1983. A summary of surveys of the Penaeid shrimp spawning ground in the Bohai Bay. Mar. Fish. Res. 5, 17-23.

4.
Deng, J. Y., Ye, C. C. and Liu, Y. C. 1990. Penaeus chinensis in the Bohai and Yellow seas. pp. 48-91. In: Deng, J. Y. (eds.), its biology and management. Ocean Press, Beijing, China.

5.
Dong, S., Kong, J., Zhang, T., Meng, X. and Wang, R. 2006. Parentage determination of Chinese shrimp (Fenneropenaeus chinensis) based on microsatellite DNA markers. Aquaculture 258, 283-288. crossref(new window)

6.
Dong, S., Kong, J., Meng, X., Zhang, Q., Zhang, T. and Wang, R. 2008. Microsatellite DNA markers associated with resistance to WSSV in Penaeus (Fenneropenaeus) chinensis. Aquaculture 282, 138-141. crossref(new window)

7.
Excoffier, L., Smouse, P. E. and Quattro, J. M. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131, 479-491.

8.
Excoffier, L., Laval, G. and Schneider, S. 2005. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform 1, 47-50.

9.
Gao, H., Kong, J., Yan, B., Yu, F., Luan, S. and Cai, S. 2008. Twelve new microsatellite markers for the Chinese shrimp Fenneropenaeus chinensis. Mol. Ecol. Resour. 8, 325-327. crossref(new window)

10.
Goldstein, D. G. and Pollock, D. D. 1997. Launching micro-satellites: a review of mutation processes and methods of phylogenetic inference. J. Hered. 88, 335-342. crossref(new window)

11.
Jang, I. K., Jun, J. C., Jo, G. J., Cho, Y. R., Seo, H. C., Kim, B. L. and Kim, J. S. 2007. Polyculture of fleshy shrimp Fenneropenaeus chinensis and white shrimp Litopenaeus vannamei with river puffer Takifugu obscurus in shrimp ponds. J. Aquacul. 20, 278-288.

12.
Hedgecock, D., Tracey, M. L. and Nelson, K. 1982. Genetics. pp. 284-403. In: Abele, L. G. (eds.), the Biology of Crustacea. Academic Press, New York.

13.
Heo, M. S. 2005. Characterization of the white spot syndrome baculovirus (WSBV) infection in fresh shrimp, Penaeus chinensis, cultured in Korea. J. Life Sci. 15, 248-252. crossref(new window)

14.
Herbinger, C. M., Doyle, R. W., Pitman, E. R., Paquet, D., Mesa, K. T., Morris, D. B., Wright, J. M. and Cook, D. 1995. DNA fingerprint based analysis of parental and maternal effects on offspring growth and survival in communally reared rainbow trout. Aquaculture 137, 245-256. crossref(new window)

15.
Liu, P., Meng, X. H., Kong, J., He, Y. Y. and Wang, Q. Y. 2006. Polymorphic analysis of microsatellite DNA in wild populations of Chinese shrimp (Fenneropenaeus chinensis). Aquac. Res. 37, 556-562. crossref(new window)

16.
Liu, Z. J. and Cordes, J. F. 2004. DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238, 1-37. crossref(new window)

17.
Marshall, T. C., Slate, J., Kruuk, L. E. B. and Pemberton, J. M. 1998. Statistical confidence for likelihood-based paternity inference in natural populations. Mol. Ecol. 7, 639-655. crossref(new window)

18.
Meng, X. H., Wang, Q. Y., Jang, I. K., Liu, P. and Kong, J. 2009. Genetic differentiation in seven geographic populations of the fleshy shrimp Penaeus (Fenneropenaeus) chinensis based on microsatellite DNA. Aquaculture 287, 46-51. crossref(new window)

19.
Peakall, R. and Smouse, P. E. 2006. GENALEX 6; genetic analysis in excel. Population genetic software for research and teaching. Mol. Ecol. Notes 6, 288-295. crossref(new window)

20.
Pemberton, J. M., Slate, J., Bancroft, D. R. and Barrett, J. A. 1995. Non amplifying alleles at microsatellite loci: a caution for parentage and population studies. Mol. Ecol. 4, 249-252. crossref(new window)

21.
Pritchard, J. K., Wen, X. and Falush, D. 2007. Documentation for structure software: version 2.2. University of Chicago, Chicago, 1-36.

22.
Rousset, F. and Raymond, M. 1995. Testing heterozygote excess and deficiency. Genetics 140, 1413-1419.

23.
Wang, H., Li, F., Xiang, J., Zhang, C. and Yu, K. 2008. Microsatellite-centromere distances and microsatellite diversity in different ploidy classes of Chinese shrimp (Fenneropenaeus Chinensis). Genetica 132, 43-50.

24.
Wang, X., Guo, X., Zhang, Y., Meng, X., Qiu, X., Liu, S. and Zhang, T. 2009. Development of polymorphic EST-derived SSR markers for the shrimp, Fenneropenaeus chinensis. Conserv. Genet. 10, 1455-1457. crossref(new window)

25.
Weir, B. S. and Cockerham, C. C. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38, 1358-1370. crossref(new window)

26.
Wright, S. 1998. Evolution and the genetics of population, variability within and among natural populations. The University of Chicago Press, Chicago.

27.
Xu, P., Zhou, L. H. and Xiang, J. H. 2001. Isolating microsatellite DNA of Chinese shrimp Penaeus chinensis. Oceanol. Limnol. Sin. 32, 255-259.