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Current status and prospects of kiwifruit (Actinidia chinensis) genomics
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  • Journal title : Journal of Plant Biotechnology
  • Volume 42, Issue 4,  2015, pp.342-349
  • Publisher : The Korean Society of Plant Biotechnology
  • DOI : 10.5010/JPB.2015.42.4.342
 Title & Authors
Current status and prospects of kiwifruit (Actinidia chinensis) genomics
Kim, Seong-Cheol; Kim, Ho Bang; Joa, Jae-Ho; Song, Kwan Jeong;
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Kiwifruit is a new fruit crop that was commercialized in the late 1970s. Recently, its cultivation and consumption have increased rapidly worldwide. Kiwifruit is a dioecious, deciduous, and climbing plant having fruit with hairs and various flesh colors and a variation in ploidy level; however, the industry consists of very simple cultivars or genotypes. The need for efficient cultivar improvement together with the evolutional and biological perspectives based on unique plant characteristics, have recently encouraged genome analysis and bioinformatics application. The draft genome sequence and chloroplast genome sequence of kiwifruit were released in 2013 and 2015, respectively; and gene annotation has been in progress. Recently, transcriptome analysis has shifted from previous ESTs analysis to the RNA-seq platform for intensive exploration of controlled genetic expression and gene discovery involved in fruit ascorbic acid biosynthesis, flesh coloration, maturation, and vine bacterial canker tolerance. For improving conventional breeding efficiency, molecular marker development and genetic linkage map construction have advanced from basic approaches using RFLP, RAPD, and AFLP to the development of NGS-based SSR and SNP markers linked to agronomically important traits and the construction of highly saturated linkage maps. However, genome and transcriptome studies have been limited in Korea. In the near future, kiwifruit genome and transcriptome studies are expected to translate to the practical application of molecular breeding.
Kiwifruit;Genome;Transcriptome;Molecular Markers;Genetic Map;Molecular Breeding;
 Cited by
Avsar B, Aliabadi DE (2015) Putative microRNA analysis of the kiwifruit Actinidia chinensis through genomic data. International J Life Sci Biotechnol Pharma Res 4:96-99

Collins BH, Horska A, Hotten PM, Riddoch C, Collins AR (2001) Kiwifruit protects against oxidative DNA damage in human cells and in vitro. Nutr Cancer 39:148-153 crossref(new window)

Collins AR, Harrington V, Drew J, Melvin R (2003) Nutritional modulation of DNA repair in a human intervention study. Carcinogenesis 24:511-513 crossref(new window)

Crowhurst RN, Lints R, Atkinson RG, Gardner RC (1990) Restriction-fragment-length-polymorphisms in the genus Actinidia (Actinidiaceae). Plant Syst Evol 172:193-203 crossref(new window)

Crowhurst RN et al (2008) Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9:351 crossref(new window)

Cui Z, Huang H, Xiao X (2002) Actinidia in China. China Agri Sci Technol. Beijing

Du D, Rawat N, Deng Z, Gmitter Jr FG (2015) Construction of citrus gene coexpression networks from microarray data using random matrix theory. Hortic Res 2:15026

Ferguson AR (1984) Kiwifruit: a botanical review. Hortic Rev 6:1-64

Ferguson AR, Bollard EG (1990) Domestication of the kiwifruit, p. 165-246. In: IJ Warrington, GC Weston (eds.) Kiwifruit: science and management. Ray Richards Publisher in association with the New Zealand, Soc Hort Sci, Auckland

Fraser LG, Harvey CF, Crowhurst RN, De Silva HN (2004) ESTderived microsatellites from Actinidia species and their potential for mapping. Theor Appl Genet 108:1010-1016 crossref(new window)

Fraser LG, McNeilage MA, Tsang GK, Harvey CF, De Silva HN (2005) Cross-species amplification of microsatellite loci within the dioecious, polyploid genus Actinidia (Actinidiaceae). Theor Appl Genet 112:149-157 crossref(new window)

Fraser LG, Tsang GK, Datson PM, De Silva HN, Harvey CF, Gill GP, Crowhurst RN, McNeilage MA (2009) A gene-rich linkage map in the dioecious species Actinidia chinensis (kiwifruit) reveals putative X/Y sex-determining chromosomes. BMC Genomics 10:102 crossref(new window)

Fredrique OS, Legave JM, Nicole MF, Hirsch AM (1994) Use of flow cytometry for rapid determination of ploidy level in the genus Actinidia. Sci Hort 57:303-313 crossref(new window)

Gao J, Huang C, Ge C, Qu X, Gu Q, Xu X (2013) Analysis of differential gene expression during color-turning stages in yellow flesh kiwifruit (Actinidia chinensis) using DGE. J Fruit Sci 2013-03

Gaj T, Gersbach CA, Barbas CF (2013) ZFN, TALEN, and CRISPR/Casbased methods for genome engineering. Trends Biotechnol 31:397-405 crossref(new window)

Gill GP, Harvey CF, Gardner RC, Fraser LG (1998) Development of sex-linked PCR markers for gender identification in Actinidia. Theor Appl Genet 97:439-445 crossref(new window)

Harvey CF, Gill GP, Fraser LG, McNeilage MA (1997) Sex determination in Actinidia. 1. Sex-linked markers and progeny sex ratio in diploid A. chinensis. Sex Plant Reprod 10:149-154 crossref(new window)

Hill MG, Mauchline N, Jones MK, Sutherland PW (2011) The response of resistant kiwifruit (Actinidia chinensis) to armoured scale insect (Diaspididae) feeding. Arthropod-Plant Interact 5:149-161 crossref(new window)

Hill MG, Wurms KV, Davy MW, Gould E, Allan A, Mauchline NA, Luo Z, Chee AA, Stannard K, Storey RD, Rikkerrink EH (2015) Transcriptome analysis of kiwifruit (Actinidia chinensis) bark in response to armoured scale insect (Hemiberlesia lataniae) feeding. PLoS ONE 10:e0141664 crossref(new window)

Hopping ME (1994) Flow cytometric analysis of Actinidia species. New Zealand J Bot 32:85-93 crossref(new window)

Huang WG, Cipriani G, Morgante M, Testolin R (1998) Microsatellite DNA in Actinidia chinensis: isolation, characterisation, and homology in related species. Theor Appl Genet 97:1269-1278 crossref(new window)

Huang HW, Li ZZ, Li JQ, Kubisiak TL, Layne DR (2002) Phylogenetic relationships in Actinidia as revealed by RAPD analysis. J American Soc Hort Sci 127:759-766

Huang S et al (2013) Draft genome of the kiwifruit Actinidia chinensis. Nature Commun 4:2640

Huang H (2014) The genus Actinidia, a world monograph. Science Press, Beijing

Kim SC, Jung YH, Kim M, Kim CH, Koh SC, Kang SH (2003) Genetic relationships of genus Actinidia based on random amplified polymorphic DNA analysis. Hort Environ Biotechnol 44:340-344

Kim YJ, Kwak CI, Gu YY, Hwang IT, Chun JY (2004a) Annealing control primer system for identification of differentially expressed genes on agarose gels. BioTechniques 36:424-426, 428, 430

Kim SC, Jung YH, Kim M, Koh SC, Song KJ, Kim HB (2004b) Characterization of a RAPD fragment unique to species with hairy fruit skin in the genus Actinidia. J Plant Biol 47:210-215 crossref(new window)

Kim CH, Kim SC, Jan KC, Song EY, Kim M, Moon DY, Song KC, Lee JS, Suh HD, Song KJ (2007a) A new kiwifruit cultivar, 'Jecy Gold' with yellow flesh. Kor J Breed Sci 39:258-259

Kim CH, Kim SC, Jang KC, Song EY, Ro NY, Moon DY, Lee JS, Seong KC (2007b) A new kiwifruit cultivar, 'Jecy Green'. Kor J Breed Sci 39:508-509

Kim CH, Kim SC, Song EY, Ro NY, Kim M, Kang KH, Jang KC, Chun SJ (2009) A new kiwifruit, 'Jecy Sweet' with high soluble solids content. Kor J Hort Sci Technol 39:508-509

Kim HB, Jun SS, Choe S, Cho JY, Choi SB, Kim SC (2010a) Identification of differentially expressed genes from male and female flowers of kiwifruit. African J Biotechnol 9:6684-6694

Kim M, Kim SC, Song KJ, Kim HB, Kim IJ, Song EY, Chun SJ (2010b) Transformation of carotenoid biosynthetic genes using a micro-cross section method in kiwifruit (Actinidia deliciosa cv. Hayward). Plant Cell Rep 29:1339-1349 crossref(new window)

Kim DG, Jin YG. Jin JY, Kim SC, Han CH, Lee YJ (2011) Effects of the Actinidia chinensis on loperamide-induced constipation in rat. Kor J Plant Res 24:61-68 crossref(new window)

Kim SC, Uhm YK, Ko S, Oh CJ, Kwack YB, Kim HL, Lee Y, An CS, Park PB, Kim HB (2015) KiwiPME1 encoding pectin methylesterase is specifically expressed in the pollen of a dioecious plant species, kiwifruit (Actinidia chinensis). Hort Environ Biotechnol 56:402-410 crossref(new window)

Korea Agricultural Marketing Information Service (KAMIS) (2014) Korea agricultural and marine product circulation information.

Korkovelos AE, Mavromatis AG, Huang WG, Hagidimitriou M, Giakoundis A, Goulas CK (2008) Effectiveness of SSR molecular markers in evaluating the phylogenetic relationships among eight Actinidia species. Sci Hortic 116:305-310 crossref(new window)

Kruger J, Thomas CM, Golstein C, Dixon MS, Smoker M, Tang SK, Mulder L, Jones JDG (2002) A tomato cysteine protease required for Cf-2-dependent disease resistance and suppression of autonecrosis. Science 296:744-747 crossref(new window)

Li HL (1952) A taxonomic review of the genus Actinidia. J Arnold Arvoretum (Harvard university) 33:1-6

Li W, Liu Y, Zeng S, Xiao G, Wang G, Wang Y, Peng M, Huang H (2015) Gene Expression profiling of development and anthocyanin accumulation in kiwifruit (Actinidia chinensis) based on transcriptome sequencing. PLoS ONE 10:e0136439 crossref(new window)

Li C, Zhang B (2016) MicroRNAs in control of plant development. J Cell Physiol 231:303-313 crossref(new window)

Liang CF (1984) Actinidia, p. 309-324. In: KM Feng (ed.) Flora reipublicae popularis sinicae. Science press, Beijing

Man Y, Wang Y, Zhang L, Li Z, Qin R, Jiang Z, Sun X, Liu C (2011) Development of microsatellite markers in Actinidia arguta (Actinidiaceae) based on the NCBI data platform. American J Bot e310-e315

Man YP, Wang YC, Jiang ZW, Gong JJ (2015) Transcriptomic analysis of pigmented inner pericarp of red-fleshed kiwifruit in response to high temperature. Acta Hortic 10.17660/ActaHortic.2015.1096.23 crossref(new window)

Michelotti V, Lamontanara A, Buriani G, Cellini A, Donati I, Vanneste JL, Cattivelli L, Spinelli F, Orru L, Tacconi G (2015a) Unraveling the molecular interaction between Pseudomonas syringae pv. actinidiae (Psa) and the kiwifruit plant through RNAseq approach. Acta Hortic 10.17660/ActaHortic.2015.1095.10 crossref(new window)

Michelotti V, Lamontanara A, Orru L, Cattivelli L, Tacconi G, Buriani G, Cellini A, Donati I, Spinelli F, Vanneste J (2015b) RNA-seq analysis of the molecular interaction between Pseudomonas syringae pv. actinidiae (Psa) and the kiwifruit. Acta Hortic 10.17660/ActaHortic.2015.1096.41 crossref(new window)

Nieuwenhuizen NJ, Maddumage R, Tsang GK, Fraser LG, Cooney JM, De Silva HN, Green S, Richardson KA, Atkinson RG (2012) Mapping, complementation, and targets of the cysteine protease actinidin in kiwifruit. Plant Physiol 158:376-388 crossref(new window)

Novo M, Romo S, Rey M, Prado MJ, Gonzalez MV (2010) Identification and sequence characterisation of molecular markers polymorphic between male kiwifruit (Actinidia chinensis var. deliciosa (A. Chev.) A. Chev.) accessions exhibiting different flowering time. Euphytica 175:109-121 crossref(new window)

Pei C, Law YW (1948) Notes on Actinidia of Szechuan and Sikang. Bot Bull Acad Sinica 2:25-33

Save R, Serrano L (1986) Some physiological and growth responses of kiwi fruit (Actinidia chinensis) to flooding. Physiol Plant 66:75-78 crossref(new window)

Schmid R (1978) Reproductive anatomy of Actinidia chinensis (Actinidiaceae). Bot J Syst Pfl 100:149-195

Scortichini M, Marcelletti S, Ferrante P, Petriccione M, Firrao G (2012) Pseudomonas syringae pv. actinidiae: a re-emerging, multi-faceted, pandemic pathogen. Mol Plant Pathol 13:631-640 crossref(new window)

Shi T, Huang H, Barker MS (2010) Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales. Ann Bot 106:497-504 crossref(new window)

Shirkot P, Sharma DR, Mohapatra T (2002) Molecular identification of sex in Actinidia deliciosa var. deliciosa by RAPD markers. Sci Hortic 94:33-39 crossref(new window)

Testolin R, Cipriani G, Costa G (1995) Sex segregation ratio and gender expression in the genus Actinidia. Sex Plant Reprod 8:129-132

Testolin R, Huang WG, Lain O, Messina R, Vecchione A, Cipriani G (2001) A kiwifruit (Actinidia spp.) linkage map based on microsatellites and integrated with AFLP markers. Theor Appl Genet 103:30-36 crossref(new window)

The Tomato Genome Consortium (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485:635-641 crossref(new window)

Van der Hoorn RAL (2008) Plant proteases: from phenotypes to molecular mechanisms. Annu Rev Plant Biol 59:191-223 crossref(new window)

Voogd C, Wang T, Varkonyi-Gasic E (2015) Functional and expression analyses of kiwifruit SOC1-like genes suggest that they may not have a role in the transition to flowering but may affect the duration of dormancy. J Exp Bot 66:4699-4710 crossref(new window)

Vissers MC, Carr AC, Pullar JM, Bozonet SM (2013) The bioavailability of vitamin C from kiwifruit. Adv Food Nutr Res 68:125-147 crossref(new window)

Wang T, Gleave AP (2012) Applications of Biotechnology in Kiwifruit (Actinidia). p. 3-30. In: EC Agbo (ed.) Innovations in Biotechnology, InTech, Shanghai

Watanabe K, Takahashi B, Shirato K (1990) Chromosome numbers in kiwifruit (Actinidia deliciosa) and related species. J Japanese Soc Hort Sci 58:835-840 crossref(new window)

Wong DCJ, Sweetman C, Ford CM (2014) Annotation of gene function in citrus using gene expression information and co-expression networks. BMC Plant Biol 14:186 crossref(new window)

Woo JW, Kim J, Kwon SI, Corvalan C, Cho SW, Kim H, Kim SG, Kim ST, Choe S, Kim JS (2015) DNA-free genome editing in plants with preassembled CRISPR-Cas9 ribonucleoproteins. Nat Biotechnol 33:1162-1164 crossref(new window)

Xiao XG, Zhang LS, Li SH, Wang B, Testolin R, Cipriani G (1999) First step in the search for AFLP markers linked to sex in Actinidia. Pro 4th Intl Symp 498:99-104

Xu Q et al. (2013) The draft genome of sweet orange (Citrus sinensis). Nat Genet 45:59-66

Yan G, Yao J, Ferguson AR, McNeilage MA, Seal AG, Murray B (1997) New reports of chromosome numbers in Actinidia (Actinidiaceae). New Zealand J Bot 35:181-186 crossref(new window)

Yao X, Tang P, Li Z, Li D, Liu Y, Huang H (2015) The first complete chloroplast genome sequences in Actinidiaceae: genome structure and comparative analysis. PLoS ONE 10:e0129347 crossref(new window)

Zhang RM (1981) Selected varieties of kiwifruit, p. 134-141. In: ZZ. Qu (ed.). Mihoutaode Zaipei he Liyong. Nongye Chubanshe, Beijing

Zhang JY, Huang SN, Mo ZH, Xuan JP, Jia XD, Wang G, Guo ZR (2015a) De novo transcriptome sequencing and comparative analysis of differentially expressed genes in kiwifruit under waterlogging stress. Mol Breed 35:208 crossref(new window)

Zhang Q, Liu C, Liu Y, VanBuren R, Yao X, Zhong C, Huang H (2015b) High-density interspecific genetic maps of kiwifruit and the identification of sex-specific markers. DNA Res 22:367-375 crossref(new window)

Zhang X, Huang C, Zhong M, Chen C, Lang B, Qu X, Xu X (2015c) Analysis of expression of the related genes with carotenoids synthesis in yellow flesh kiwifruit (Actinidia chinensis) based on RNA-seq. J Fruit Sci 2015-3

Zhou J, Liu YF, Huang HW (2011) Characterization of 15 novel single nucleotide polymorphisms (SNPs) in the Actinidia chinensis species complex (Actinidiaceae). American J Bot 98:E100-E102 crossref(new window)