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In silico analysis of MeJA-induced comparative transcriptomes in Brassica oleraceae L. var. capitata
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  • Journal title : Journal of Plant Biotechnology
  • Volume 43, Issue 2,  2016, pp.189-203
  • Publisher : The Korean Society of Plant Biotechnology
  • DOI : 10.5010/JPB.2016.43.2.189
 Title & Authors
In silico analysis of MeJA-induced comparative transcriptomes in Brassica oleraceae L. var. capitata
Lee, Ok Ran; Kim, Dae-Soo;
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 Abstract
Brassica oleraceae var capitata is a member of the Brassicaceae family and is widely used as an horticultural crop. In the present study, transcriptome analysis of B. oleraceae L. var capitata was done for the first time using eight-week old seedlings treated with MeJA, versus mock-treated samples. The complete transcripts for both samples were obtained using the GS-FLX sequencer. Overall, we obtained 275,570 and 266,457 reads from seedlings treated with or without MeJA, respectively. All the obtained reads were annotated using biological databases and functionally classified using gene ontology (GO), the Kyoto Encyclopedia of Genes and Genomics (KEGG). By using GO analyses, putative transcripts were examined in terms of biotic and abiotic stresses, cellular component organization, biogenesis, and secondary metabolic processes. The KEGG pathways for most of the transcripts were involved in carbohydrate metabolism, energy metabolism, and secondary metabolite synthesis. In order to double the sequenced data, we randomly chose two putative genes involved in terpene biosynthetic pathways and studied their transcript patterns under MeJA treatment. This study will provide us a platform to further characterize the genes in B. oleracea var capitata.
 Keywords
Brassica oleracea;EST;Gene ontology;KEGG pathway;Methyl jasmonate;
 Language
English
 Cited by
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