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Determination of Phylogenetic Relationships of Turkish Native Cattle Breeds with Other Cattle Breeds Using Mitochondrial DNA D-loop Sequence Polymorphism

  • Ozdemir, Memis (Department of Animal Science, Faculty of Agriculture, Ataturk University) ;
  • Dogru, Unsal (Department of Animal Science, Faculty of Agriculture, Ataturk University)
  • Received : 2007.09.26
  • Accepted : 2009.04.02
  • Published : 2009.07.01

Abstract

The aim of this study was to determine the specific polymorphic sites in cattle breeds and inter- and interbreed genetic variation among breeds and to develop a databank of Turkish native cattle mtDNA using sequence analysis. The entire D-loop region was analyzed based on DNA sequences in Turkish Grey, East Anatolian Red, South Anatolian Red, and Anatolian Black native breeds. In total, 68 nucleotide differences were observed at 26 different sites. The variable positions consisted of 22 transitions, two transversions, and two insertions, but no deletions. Haplotype number, haplotype diversity, nucleotide diversity, and mean number of pairwise difference values were found to be 17, 0.993, 0.00478, and 4.275, respectively. In addition, a phylogeny was developed by comparison among cattle populations for which the entire D-loop sequence was available. A high level of genetic variation was observed within and among the native cattle breeds.

Keywords

Genetic Resource;Genetic Diversity;Mitochondrial DNA;D-loop Sequencing;Cattle

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