- Volume 25 Issue 2
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Genetic Differentiation of Chinese Indigenous Meat Goats Ascertained Using Microsatellite Information
- Ling, Y.H. (College of Animal Science and Technology, Anhui Agricultural University) ;
- Zhang, X.D. (College of Animal Science and Technology, Anhui Agricultural University) ;
- Yao, N. (Institute of Animal Science, Chinese Academy of Agricultural Sciences) ;
- Ding, J.P. (College of Animal Science and Technology, Anhui Agricultural University) ;
- Chen, H.Q. (College of Animal Science and Technology, Anhui Agricultural University) ;
- Zhang, Z.J. (College of Animal Science and Technology, Anhui Agricultural University) ;
- Zhang, Y.H. (College of Animal Science and Technology, Anhui Agricultural University) ;
- Ren, C.H. (College of Animal Science and Technology, Anhui Agricultural University) ;
- Ma, Y.H. (Institute of Animal Science, Chinese Academy of Agricultural Sciences) ;
- Zhang, X.R. (College of Animal Science and Technology, Anhui Agricultural University)
- Received : 2011.08.31
- Accepted : 2011.10.31
- Published : 2012.02.01
To investigate the genetic diversity of seven Chinese indigenous meat goat breeds (Tibet goat, Guizhou white goat, Shannan white goat, Yichang white goat, Matou goat, Changjiangsanjiaozhou white goat and Anhui white goat), explain their genetic relationship and assess their integrity and degree of admixture, 302 individuals from these breeds and 42 Boer goats introduced from Africa as reference samples were genotyped for 11 microsatellite markers. Results indicated that the genetic diversity of Chinese indigenous meat goats was rich. The mean heterozygosity and the mean allelic richness (AR) for the 8 goat breeds varied from 0.697 to 0.738 and 6.21 to 7.35, respectively. Structure analysis showed that Tibet goat breed was genetically distinct and was the first to separate and the other Chinese goats were then divided into two sub-clusters: Shannan white goat and Yichang white goat in one cluster; and Guizhou white goat, Matou goat, Changjiangsanjiaozhou white goat and Anhui white goat in the other cluster. This grouping pattern was further supported by clustering analysis and Principal component analysis. These results may provide a scientific basis for the characteristization, conservation and utilization of Chinese meat goats.
- Barker, J. S. F., S. G. Tan, S. S. Moore, T. K. Mukherjee, J. L. Matheson and O. S. Selvaraj. 2001. Genetic variation within and relationships among populations of Asian goats. J. Anim. Breed. Genet. 118(4):213-233. https://doi.org/10.1046/j.1439-0388.2001.00296.x
- Canon, J., D. Garcia, M. A. Garcia-Atance, G. Obexer-Ruff, J. A. Lenstra, P. Ajmone-Marsan and S. Dunner. 2006. Geographical partitioning of goat diversity in Europe and the Middle East. Anim. Genet. 37(4):327-334. https://doi.org/10.1111/j.1365-2052.2006.01461.x
- Chen, S. Y., Y. H. Su, S. F. Wu, T. Sha and Y. P. Zhang. 2005. Mitochondrial diversity and phylogeographic structure of Chinese domestic goats. Mol. Phylogenet. Evol. 37(3):804-814. https://doi.org/10.1016/j.ympev.2005.06.014
- Chen, S. L., B. Fan, B. Liu, M. Yu, S. H. Zhao, M. J. Zhu, T. A. Xiong and K. Li. 2006. Genetic variations of 13 indigenous Chinese goat breeds based on cytochrome b gene sequences. Biochem. Genet. 44(3):89-99.
- Di, R., S. M. Farhad Vahidi, Y. H. Ma, X. H. He, Q. J. Zhao, J. L. Han, W. J. Guan, M. X. Chu, W. Sun and Y. P. Pu. 2010. Microsatellite analysis revealed genetic diversity and population structure among Chinese cashmere goats. Anim. Genet. doi: 10.1111/j.1365-2052.2010.02072.x https://doi.org/10.1111/j.1365-2052.2010.02072.x
- Evanno, G., S. Regnaut and J. Goudet. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14(8):2611-2620. https://doi.org/10.1111/j.1365-294X.2005.02553.x
- Goudet, J. 2001. FSTAT, a program to estimate and test gene diversities and fixation (version 220.127.116.11). Available at: http://www2.unil.ch/popgen/softwares/fstat.htm
- Li, X., Y. Zhang, S. Chen and F. Zeng. 1997. Study on the mtDNA RFLP of goat breeds. Zool. Res. 18(4):421-428.
- Li, X. L., Y. P. Zhang, S. O. Chen, F. T. Zeng, X. P. Qiu and X. M. Liu. 2000. Study on the random amplified polymorphic DNA of main native goat breeds in China. Acta. Vet. Zoot. Sin. 31(5):416-422.
- Li, X. L. and A. Valentini. 2004. Genetic diversity of Chinese indigenous goat breeds based on microsatellite markers. J. Anim. Breed. Genet. 121(5): 350-355. https://doi.org/10.1111/j.1439-0388.2004.00465.x
- Mao, Y. Y., H. D. Luo, H. H. Guo, X. Z. Zhang, Z. W. Wang, J. Li, D. C. Wang, Y. C. Zhang and H. Tian. 2010. Analysis on Microsatellite DNA Polymorphism and the Prediction of Heterosis among Boer Goat and Shanxi Local Goats. China. Herbi. 4:5-8.
- Naderi, S., H. R. Rezaei, F. Pompanon, M. G. B. Blum, R. Negrini, H. R. Naghash, B. Özge, M. Mashkour, O. E. Gaggiotti, A. M. Paolo, A. Kence, J. D. Vigne and P. Taberlet. 2008. The goat domestication process inferred from large-scale mitochondrial DNA analysis of wild and domestic individuals. Proc. Natl. Acad. Sci. USA. 105(46):17659-17664. https://doi.org/10.1073/pnas.0804782105
- Nei, M. 1972. Genetic distances between populations. Am. Nat. 106:283-292. https://doi.org/10.1086/282771
- Nei, M., R. Tajima and Y. Tateno. 1983. Accuracy of estimated phylogenetic trees from molecular data. J. Mol. Evol. 19(2): 153-170. https://doi.org/10.1007/BF02300753
- Pan, J. W., X. W. Liang, Q. H. Liu and R. H. Bao. 2009. Analysis of genetic diversity in Fujian local goat and Boer goat by using microsatellite markers. J. Fujian. Agric. Forest. Univ. 38(2): 144-149.
- Peter, C., M. Bruford, T. Perez, S. Dalamitra, G. Hewitt and G. Erhardt. 2007. Genetic diversity and subdivision of 57 European and Middle-Eastern sheep breeds. Anim. Genet. 38(1):37-44. https://doi.org/10.1111/j.1365-2052.2007.01561.x
- Raymond, M. and F. Rousset. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J. Hered. 86(3):248-249.
- Sambrook, J. and D. Russell. 2001. Molecular cloning: A laboratory manual. 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, USA.
- Tu, Y. R., Y. Jiang, Z. Y. Han and W. Q. Feng. 1989. Sheep and goat breeds in China, Shanghai: Shanghai Scientific and Technical Publishing House, Shanghai.
- Weir, B. S. and C. C. Cockerham. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38(6):1358-1370. https://doi.org/10.2307/2408641
- Wu, Y. P., W. J. Guan, Q. J. Zhao, X. H. He, Y. B. Pu, J. H. Huo, J. F. Xie, J. L. Han, S. Q. Rao and Y. H. Ma. 2009. A fine map for maternal lineage analysis by mitochondrial hyperviable region in 12 Chinese goat breeds. J. Anim. Sci. 80(4):372-380. https://doi.org/10.1111/j.1740-0929.2009.00659.x
- Yeh, F. C. and T. J. B. Boyle. 1997. Population genetic analysis of codominant and dominant markers and quantitative traits. Belg. J. Bot. 129(2):157.
- Zhao, Y. J., H. Z. Xu, L. X. Shi and J. H. Zhang. 2011. Polymorphisms in Exon 2 of MHC class II DRB3 gene of 10 domestic goats in southwest China. Asian-Aust. J. Anim. Sci. 24(6):752-756. https://doi.org/10.5713/ajas.2011.10398
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- Sequence Characterization of DSG3 Gene to Know Its Role in High-Altitude Hypoxia Adaptation in the Chinese Cashmere Goat vol.9, pp.1664-8021, 2018, https://doi.org/10.3389/fgene.2018.00553
- Genetic diversity of the Chinese goat in the littoral zone of the Yangtze River as assessed by microsatellite and mtDNA vol.8, pp.10, 2018, https://doi.org/10.1002/ece3.4100