- Volume 25 Issue 7
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Genetic Diversity of Myanmar and Indonesia Native Chickens Together with Two Jungle Fowl Species by Using 102 Indels Polymorphisms
- Maw, Aye Aye (United Graduate School of Agricultural Science, Kagoshima University) ;
- Shimogiri, Takeshi (Faculty of Agriculture, Kagoshima University) ;
- Riztyan, Riztyan (United Graduate School of Agricultural Science, Kagoshima University) ;
- Kawabe, Kotaro (Frontier Science Research Centre, Kagoshima University) ;
- Kawamoto, Yasuhiro (Faculty of Agriculture, University of the Ryukyus) ;
- Okamoto, Shin (Faculty of Agriculture, Kagoshima University)
- Received : 2011.12.26
- Accepted : 2012.04.03
- Published : 2012.07.01
The efficiency of insertion and/or deletion (indels) polymorphisms as genetic markers was evaluated by genotyping 102 indels loci in native chicken populations from Myanmar and Indonesia as well as Red jungle fowls and Green jungle fowls from Java Island. Out of the 102 indel markers, 97 were polymorphic. The average observed and expected heterozygosities were 0.206 to 0.268 and 0.229 to 0.284 in native chicken populations and 0.003 to 0.101 and 0.012 to 0.078 in jungle fowl populations. The coefficients of genetic differentiation (Gst) of the native chicken populations from Myanmar and Indonesia were 0.041 and 0.098 respectively. The genetic variability is higher among native chicken populations than jungle fowl populations. The high Gst value was found between native chicken populations and jungle fowl populations. Neighbor-joining tree using genetic distance revealed that the native chickens from two countries were genetically close to each other and remote from Red and Green jungle fowls of Java Island.
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- The Genetic Diversity of Eight Chicken Populations Assessed by 102 Indels Markers vol.50, pp.2, 2013, https://doi.org/10.2141/jpsa.0120088
- Genome-Wide Characterization of Insertion and Deletion Variation in Chicken Using Next Generation Sequencing vol.9, pp.8, 2014, https://doi.org/10.1371/journal.pone.0104652