Asian-Australasian Journal of Animal Sciences (아세아태평양축산학회지)

Asian Australasian Association of Animal Production Societies (아세아태평양축산학회)
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Genetic Diversity of mtDNA D-loop Polymorphisms in Laotian Native Fowl Populations

  • Kawabe, K. (Institute of Gene Research, Natural Science Centre for Research and Education, Kagoshima University) ;
  • Worawut, R. (Faculty of Veterinary Medicine, Kasetsart University) ;
  • Taura, S. (Institute of Gene Research, Natural Science Centre for Research and Education, Kagoshima University) ;
  • Shimogiri, T. (Faculty of Agriculture, Kagoshima University) ;
  • Nishida, T. (Faculty of Veterinary Medicine, Kasetsart University) ;
  • Okamoto, S. (Faculty of Agriculture, Kagoshima University)
  • Received : 2013.07.22
  • Accepted : 2013.09.21
  • Published : 2014.01.01

Abstract

Here, we studied the genetic diversity of native fowls in Laos by analyzing a mitochondrial DNA (mtDNA) sequence polymorphism. A 546-bp fragment of the mtDNA D-loop region was sequenced in 129 chickens from the areas of Vientiane, Luang Prabang and Pakse. In total, 29 haplotypes were identified and formed five clades. Haplotype diversity and nucleotide diversity of the native fowls in Laos were $0.85536{\pm}0.0172$ and $0.010158{\pm}0.005555$, respectively. Although the Laotian native fowls were distributed across five clades, most of them were clustered in two main clades (A and B), which were originated in China. The other haplotypes were contained in clades D, F, and I, which originated from continental southeast Asia. These results suggest that multiple maternal lineages were involved in the origin of domestic chicken in Laos. Moreover, there appear to be at least two maternal lineages, one from China and the other from the southeast Asian continent.

Keywords

Native Fowl;Genetic Variability;mtDNA;Maternal Origin

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References

  1. Akishinonomiya, F., T. Miyake, S. Sumi, M. Takada, S. Ohno, and N. Kondo. 1994. One subspecies of the red junglefowl (Gallus gallus gallus) sufficies as the matriarchic ancestor of all domestic breeds. Proc. Natl. Acad. Sci. USA 91:12505-12509. https://doi.org/10.1073/pnas.91.26.12505
  2. Akishinonomiya, F., T. Miyake, M. Takada, R. Shingu, T. Endo, T. Gojobori, N. Kondo, and S. Ohno. 1996. Monophyletic origin and unique dispersal patterns of domestic fowls. Proc. Natl. Acad. Sci. USA 93:6792-6795. https://doi.org/10.1073/pnas.93.13.6792
  3. Bandelt, H. J, P. Forster, and A. Rohl. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16:37-48. https://doi.org/10.1093/oxfordjournals.molbev.a026036
  4. Cuc, N. T. K., H. Simianer, L. F. Groeneveld, and S. Weigend. 2011. Multiple maternal lineages of vietnamese local chickens inferred by mitochondrial D-loop sequences. Asian-Aust. J. Anim. Sci. 24:155-161. https://doi.org/10.5713/ajas.2011.10155
  5. Desjardins, P. and R. Morais. 1990. Sequence and gene organization of the chicken mitochondrial genome: a novel gene order in higher vertebrates. J. Mol. Biol. 212:599-634. https://doi.org/10.1016/0022-2836(90)90225-B
  6. Excoffier, L. and H. E. L. Lischer. 2010. Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Res. 10:564-567. https://doi.org/10.1111/j.1755-0998.2010.02847.x
  7. Hoque, M. R., N. R. Choi, H. Sultana, B. S. Kang, K. N. Heo, S. K. Hong, C. Jo, and J. H. Lee. 2013. Phylogenetic analysis of a privately-owned Korean native chicken population using mtDNA d-loop variations. Asian-Aust. J. Anim. Sci. 26:157-162. https://doi.org/10.5713/ajas.2012.12459
  8. Kanginakudru, S., M. Metta, R. D. Jakati, and J. Nagaraju. 2008. Genetic evidence from Indian red jungle fowl corroborates multiple domestication of modern day chicken. BMC Evol. Biol. 8:174. https://doi.org/10.1186/1471-2148-8-174
  9. Larkin M. A., G. Blackshields, N. P. Brown, R. Chenna, P. A. McGettigan, H. McWilliam, F. Valentin, I. M. Wallace, A. Wilm, R. Lopez, J. D. Thompson, T. J. Gibson, and D. G. Higgins. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23:2947-2948. https://doi.org/10.1093/bioinformatics/btm404
  10. Liu, Y. P., G. S. Wu, Y. G. Yao, Y. W. Miao, G. Luikart, M. Baig, A. Beja-Pereira, Z. L. Ding, M. G. Palanichamy, and Y. P. Zhang. 2006. Multiple maternal origins of chickens: Out of the Asian jungles. Mol. Phylogenet. Evol. 38:12-19. https://doi.org/10.1016/j.ympev.2005.09.014
  11. Muchadeyi, F. C., H. Eding, H. Simianer, C. B. A. Wollny, E. Groeneveld, and S. Weigend. 2008. Mitochondrial DNA D-loop sequences suggest a Southeast Asian and Indian origin of Zimbabwean village chickens. Anim. Genet. 39:615-622. https://doi.org/10.1111/j.1365-2052.2008.01785.x
  12. Nei, M. 1987. Molecular Evolutionary Genetics Columbia University Press: New York, USA.
  13. Oka, T., Y. Ino, K. Nomura, S. Kawashima, T. Kuwayama, H. Hanada, T. Amano, M. Takada, N. Takahatam Y. Hayashi, and F. Akishinonomiya 2007. Analysis of mtDNA sequences shows Japanese native chickens have multiple origins. Anim. Genet. 38:287-293. https://doi.org/10.1111/j.1365-2052.2007.01604.x
  14. Okamoto, S., N. Tsunekawa, Y. Kawamo, R. Worawut, K. Kawabe, Y. Maeda, and T. Nishida. 1999. Blood protein polymorphisms of native fowls in Laos. Asian-Aus. J. Anim. Sci. 12:1011-1014. https://doi.org/10.5713/ajas.1999.1011
  15. Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar. 2011. MEGA5: molecular evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739. https://doi.org/10.1093/molbev/msr121

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