Development of Bioinformatics Capacity in Support of the KOICA-UPLB-IRRI Agricultural Genomics Research Center

  • Ramil P. Mauleon (Rice Breeding Innovation Platform, International Rice Research Institute) ;
  • Lord Hendrix Barboza (Rice Breeding Innovation Platform, International Rice Research Institute) ;
  • Frances Nikki Borja (Rice Breeding Innovation Platform, International Rice Research Institute) ;
  • Dmytro Chebotarov (Rice Breeding Innovation Platform, International Rice Research Institute) ;
  • Jeffrey Detras (Rice Breeding Innovation Platform, International Rice Research Institute) ;
  • Venice Juanillas (Rice Breeding Innovation Platform, International Rice Research Institute) ;
  • Riza Pasco (Rice Breeding Innovation Platform, International Rice Research Institute) ;
  • Kenneth L. McNally (Rice Breeding Innovation Platform, International Rice Research Institute)
  • Published : 2022.10.13

Abstract

Capacity building for bioinformatics could be achieved with the systematic training of research staff and higher degree students in the current best practices for analysis of data from 'omic-type experiments. It is anticipated that the KOICA-University of the Philippines Los Baños - International Rice Research Insitute Agricultural Genomics Research Center activities will focus on the use of next generation sequencing technology for genome sequencing and annotation, genome variant discovery for use in GWAS and QTL mapping, and transcriptome analysis of organisms important to agriculture and food security. Such activities require that researchers have high levels of knowledge and skills in bioinformatics in order to gain insights from the results of the experiments performed. In this talk the bioinformatic tools/solutions and online training materials already available will be presented, as well the upcoming resources under development in support of the project.

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Acknowledgement

The bioinformatics tools, portal development and support for training is supported through the KOICA project.