Comparison of metabolic diversity by sole carbon source utilization and genetic diversity by restriction patterns of amplified 16S rDNA (ARDRA)in soil bacterial communities.

토양세균 군집의 대사 다양성과 16S rDNA의 제한효소 지문분석에 의한 유전적 다양성의 비교

  • 송인근 (한양대 생물학과, 서울대 분자미생물학연구센터) ;
  • 최영길 (한양대 생물학과, 서울대 분자미생물학연구센터) ;
  • 김유영 (한양대 생물학과) ;
  • 조홍범 (서경대 생물공학과)
  • Published : 1999.03.01

Abstract

To investigate soil bacterial diversity according to vegelalioo types, utilizing ability of sole carbon sources and restriction enzyme patterns of 16s rDNA were analyzed. From the both results; five kinds of soil microbial communities were grouped as forest soil (Quercus mongolica and Pinus densi&ra vegetation), grass-agricultured soil and microbial communities of naked soil. But, both soil microbial communities of directily exlracted from ths soil and indirectly extracted from heterotrophic bacteria that cultured soil in LB medium showed very different similarity.

BIOLOG GN microplate를 이용한 유일탄소원의 이용능 비교를 통한 대사적 유사성과 16S rDNA 의 PCR 증폭산물의 제한효소 지문 분석에 따른 유전적 유사성을 5종의 식생토양에 따른 토양미생물 군집을 대상으로 비교하였다. 16S rDNA를 증폭하여 제한효소 지문을 분석한 결과, 토양으로부터 직접 추출하여 증폭한 토양세균 군집의 16S rDNA의 유전적 유사도는 BIOLOG GN microplate를 이용한 대사적 구조와 일치하는 경향을 보았다. 그러나 배양된 종속영양세균 군집의 다양성과는 유전적 유사도가 매우 낮게 나타났다.

Keywords

References

  1. 한국미생물학회지 v.35 no.1 토양세균 군집의 탄소원 이용에 의한 지문분석 송인근;안영범;신규철;조홍범;최영길
  2. Modern Bacterial Taxonomy Austin, B.;F.G. Priest
  3. Appl. Environ. Microbiol. v.61 Impact of carbon and flooding on the metabolic diversity of microbial communities in soils Bossio, D. A.;K. M. Scow.
  4. J. Microbiol. Methods v.30 Comparison of substrate utilization assay and fatty acid analysis of soil microbial communities Buyer, J. S.;L. E. Drinkwater
  5. J. Microbiol. Methods v.28 Electroelution to remove humic acids from soil DNA and RNA extracts Chandler,D. P.;R. W. Schreckhies;J. L. Smith;H. Bolton Jr.
  6. Appl. Environ. Microbiol. v.57 Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level soli-carbon-source utilization Garland, J. L.;A. L. Mills
  7. Appl. Environ. Microbiol. v.61 Analysis factors affecting the accuracy, reproducibility, and interpletation of microbial community carbon source utilization patterns Haak, S. K.;H. Garehow;M. J. Klug;L. J. Forney
  8. Appl. Environ. Microbiol. v.54 DNA probe method for the detection of specific microorganisms in the soil bacterial community Holben, W. E.;J. K. Janssen;B. K. Chelm;J. M. Tiedje
  9. Appl. Environ. Microbiol. v.59 Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorpisms. Jensen, M. A.;J. A. Webster;N. Straus
  10. Appl. Environ. Microbiol. v.61 Suvival and activity of Psedomonas sp. strain B13 (FR1) in a marine microcosm determined by quantitative PCR and and rRNA-targeting probe and its effect on the indigeneous bacterioplankton Leser, T. D.;M. Boye;N. B. Hendriksen
  11. Appl. Environ. Microbiol. v.64 Design and evaluation of useful bacterium-specific PCRT primers that amplify genes coding for bacterial 16s rRNA Marchesi, J. R.;T. Sato;A. J. Weightman;T. A. Martin;J. C. Fry;S. J. Hiom;W. G. Wade
  12. Molecular Microbial Ecology Manual Bacterial community fingerprinting of amplified 16S and 16S-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA) Massol-Deya, A.;D. A. Hickey, R. F.;Odelson;J. M. Tiedje;A.D.L. Akkermans;J. D. van Elsas;F. J. de Bruijn (eds.)
  13. J. Microbiol. Methods v.7 The extraction and purification of microbial DNA from sediments Ogram,A.;G. S. Sayler;T. Barkay
  14. Curr. Microbiol. v.29 An effective methods to extract DNA from environmental samples for polymerase chain reaction amplification and DNA fingerprint analysis Porteous, L. A.;J. L. Armstrong;R. J. Seidler;L. S. Watrud
  15. J. Microbiol. Methods v.32 Automated fragment length analysis of fluorescently-labeled 16S rDNA after digestion with 4-base cutting restriction enzymes Pukall, R.;E. Brambilla;E. Stackebrandt
  16. Soil Biol. Biochem v.26 Potential application of a community hybridization technique for assessing changes in the population structure of soil microbial communities Ritz, K.;B. S. Griffiths
  17. Beyond biomass: composition and functional analysis for soil microbial communities Ritz, K.;J. Dighton;K. E. Giller
  18. NTSYS-pc numerical taxonomy and multivariate analysis system, version 1.80 Rohlf, F. J.
  19. Numerical taxonomy: The principles and practice of numerical classification Sneath, P. H. A.;P. R. Sokal
  20. Appl. Environ. Microbiol. v.56 High diversity in DNA od soil bacteria Torsvik, V;J. Gosksφyr;F. L. Daae
  21. FEMS Microbiol. Lett. v.93 Rapid identification of bacteria of the Comamamonadaceae with amplified ribosomal DNA-restriction analysis(ARDRA) Vaneechoutee, M.;R. Rossau;P. De Vos;M. Gillis;D. Janssens;N. Paepe;A. De Rouck;T. Fiers;G. Claeys;K. Kersters
  22. Appl. Environ. Microbiol. v.62 Diversity of uncultured microorganisms associated with the seagrass polymorphism analysis of PCR-amplified 16S rRNA genes. Weidner, S.;W. Arnold;A. Puhler
  23. Beyond the Biomass Fingerprinting bacterial soil communities using Biolog microtitre plates Winding, A. K.;K. Ritz;J. Dighton;K. E. Giller(eds.)
  24. Environ. Managemant v.21 Effects of recreational impacts on soil microbial communities Zabinski, C. A.;J. E. Gannon
  25. Soil Biol. Biochem. v.26 Functional diversity of microbial communities: a quantitative approach Zak,C. J.;M. R. Wiiling;D. L. Moorhead;H. J. Wildman