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Microsatellite Sequences of Mammals and Their Applications in Genome Analysis in Pigs - A Review

  • Behl, Rahul (Animal Genetics Division, National Bureau of Animal Genetic Resources) ;
  • Sheoran, Neelam (Animal Genetics Division, National Bureau of Animal Genetic Resources) ;
  • Behl, Jyotsna (Animal Genetics Division, National Bureau of Animal Genetic Resources) ;
  • Tantia, M.S. (Animal Genetics Division, National Bureau of Animal Genetic Resources) ;
  • Vijh, R.K. (Animal Genetics Division, National Bureau of Animal Genetic Resources)
  • 발행 : 2002.12.01

초록

The microsatellites are the short tandem repeats of 1 to 6 bp long monomer sequences that are repeated several times. These short tandem repeats are considered to be generated by the slipped strand mispairing. Based on the unique capability of alternating purine-pyrimidine residues to form Z-DNA, the possible role of the microsatellites in gene regulation has been proposed. The microsatellites are highly polymorphic, follow Mendelian inheritance and are evenly distributed throughout the genomes of eukaryotes. They are easy to isolate and the polymerase chain reaction based typing of the alleles can be readily automated. These properties make them the preferred markers for comparison of the genetic structure of the closely related breeds/populations; very high-resolution genetic mapping and parentage testing etc. The microsatellites have rapidly replaced the restriction fragment length polymorphism (RFLP) and the random amplified polymorphic DNA (RAPD) in most applications in the population genetics studies in most species, including the various farm animals viz. cattle, buffalo, goat, sheep and pigs etc. More and more reports are now available describing the use of microsatellites in pigs ranging from measurement of genetic variation between breeds/populations, developing high resolution genetic maps to identifying and mapping genes of biological and economic importance.

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참고문헌

  1. Albanase, V., N. F. Biguet, H. Kiefer, E. Bayard, J. Mallet and R. Meloni. 2001. Quantitative effects on gene silencing by allelic variation at a tetranucleotide microsatellite. Human Mol. Genet. 10:1785-1792. https://doi.org/10.1093/hmg/10.17.1785
  2. Alter, L., O. Francino and A. Sanchez. 2001. Microsatellite polymorphism in closely related dogs. J. Hered. 92:276-279. https://doi.org/10.1093/jhered/92.3.276
  3. Archibald, A. L., J. F. Brown, S. Couperwhite, H. A. McQueen, D. Nicholson, C. S. Haley, W. Coppieters, A. Van de Weghe, A. Storatil, A. K. Wintero, M. Fredholm, N. J. Larsen, V. H. Nielsen, D. Milan, N. Woloszyu, A. Robic, M. Dalens, J. Riquet, J. Gellin, J. C. Caritez, D. Hue, G. Burgand, L. Ollivier, J. P. Binadel, M. Vaiman, C. Renard, H. Geldermann, R. Davoli, D. Ruyter, E. J. M. Versteger, M. A. M. Groenen, W. Davies, B. Hoyheim, A. Keiserud, L. Andersson, H. Ellegren, M. Johansson, L. Marklund, J. R. Miller, D. V. Anderson, E. Singer, A. J. Jeffreys, C. Moran, P. Tissier Le, M. F. Rothschild, C. K. Tuggle, D. Vaske, J. Helm, H. C. Liu, A. Rahman, T. P. Yu, R. G. Larson and C. B. Schmitz. 1995. The PiGMaP consortium linkage map of the pig (Sus scrofa). Mamm. Genome 6:157-175. https://doi.org/10.1007/BF00293008
  4. Berandse, W., D. Vaiman, S. J. Kemp, Y. Sugimoto, S. M. Armitage, J. L. Williams, H. S. Sun, A. Eggen, M. Agaba, S. A. Aleyasin, M. Band, M. D. Bishop, J. Buitkamp, K. Byrne, F. Collins, L. Cooper, W. Coppettiers, B. Denys, R. D. Drinlwater, K. Easterday, C. Elduque, S. Ennis, G. Erhardt and L. Li et al. 1997. A medium density genetic linkage map of the bovine genome. Mamm. Genome. 8:21-28. https://doi.org/10.1007/s003359900340
  5. Bart-Delabesse, F., J. Sarfati, J. P. Debeaupuis, W. Van Leeuwen, A. Van Belkum, S. Bretange and J. P. Latge. 2001. Comparison of RFLP, MLP and RAPD analysis for finger printing Aspergillus fumigatus isolates. J. Clin. Microbiol. 39:2683-2686. https://doi.org/10.1128/JCM.39.7.2683-2686.2001
  6. Beckmann, J. S. and J. L. Weber. 1992. Survey of human and rat microsatellites. Genomics. 12:627-631. https://doi.org/10.1016/0888-7543(92)90285-Z
  7. Behl, R., R. Kaul, N. Sheoran, J. Behl, M. S. Tantia and R. K. Vijh. 2002. Genetic identity of two Indian pig types using microsatellite markers. Anim. Genet. 33:158-159. https://doi.org/10.1046/j.1365-2052.2002.0831a.x
  8. Beuzen, N. D., M. J. Stear and K. C. Chang. 2000. Molecular markers and their use in animal breeding. Vet. J. 160:42-52. https://doi.org/10.1053/tvjl.2000.0468
  9. Biessmann, H. and J. M. Mason. 1992. Genetics and molecular biology of telomeres. Adv. Genet. 30:185-249. https://doi.org/10.1016/S0065-2660(08)60321-1
  10. Binadel, J., D. M. Ian, N. Iannucelli, Y. Amigues, M. Y. Boscher, F. Bourgeois, J. C. Caritez, J. Gruand, P. LeRoy, H. Lagant, R. Quintanilla, C. Renard, J. Gellin, L. Ollivier and C. Chevalet. 2001. Detection of quantitative trait loci for growth and fatness in pigs. Genet. Sel. Evol. 33:289-309. https://doi.org/10.1186/1297-9686-33-3-289
  11. Bjornstad, G. and K. H. Roed. 2001. Breed demarcation and potential for breed allocation of horses assessed by microsatellite markers. Anim. Genet. 32:59-65. https://doi.org/10.1046/j.1365-2052.2001.00705.x
  12. Blaho, J. A. and R. D. Wells. 1989. Left handed Z-DNA and genetic recombination. Prog. Nucl. Acid Res. Mol. Biol. 37:107-126. https://doi.org/10.1016/S0079-6603(08)60696-0
  13. Botstein, D., R. L. White, M. Skolnick and R. W. Davis. 1980. Construction of a genetic map in man using restriction fragment length polymorphism. Am. J. Human Genet. 32:314-331.
  14. Bowcock, A. M., A. Ruiz-Linares, J. Tomfohrde, E. Minch, J. R. Kidd and L. L. Cavalli-Sfarza. 1994. High resolution of human evolutionary trees with polymorphic microsatellites. Nature. 38:455-457. https://doi.org/10.1038/368455a0
  15. Bowling, A. T., M. L. Eggleston-Statt, G. Byrns, R. S. Clark, S. Dileanis and E. Wictum. 1997. Validation of microsatellite markers for routine horse parentage testing. Anim. Genet. 28:247-252. https://doi.org/10.1111/j.1365-2052.1997.00123.x
  16. Bruford, M. W. and R. K. Wayne. 1993. Microsatellites and their application to population genetic studies. Curr. Opin. Genet. Devep. 3:939-943. https://doi.org/10.1016/0959-437X(93)90017-J
  17. Brutlag, D. L. 1980. Molecular arrangements and evolution of heterochromatic DNA. Ann. Rev. Genet. 14:121-14 https://doi.org/10.1146/annurev.ge.14.120180.001005
  18. Canon, J., P. Alexandario, I. Bessa, C. Carleos, Y. Carretero, S. Donner, N. Ferran, D. Garcia, J. Jordana, D. Laloe, A. Pereira, A. Sanchez and K. Moazami-Goudarzi. 2001. Genetic diversity measures of local European beef cattle breeds for conservation purpose. Genet. Selec. Evol. 33:311-332. https://doi.org/10.1186/1297-9686-33-3-311
  19. Colson, I. and D. B. Goldstein. 1999. Evidence for complex mutations at microsatellite loci in Drosophilla. Genetics. 152:617-627.
  20. Coppieters, W., A. Vande Weghe, L. Peelman, A. Depicker, A. Van Zeveran and Y. Bouquet. 1993. Characterization of porcine polymorphic microsatellite loci. Anim. Genet. 24:163-179. https://doi.org/10.1111/j.1365-2052.1993.tb00281.x
  21. Crawford, A. M., K. G. Dodds, A. J. Ede, C. A. Pearson, G. W. Montgomery, H. G. Garmonswany, A. E. Beattie, K. Davies, J. F. Madox, S. W. Kappes, R. T. Stone, T. C. Nguyen, J. M. Penty, E. A. Lord, J. E. Broom, J. Buitkamp, W. Schwaiger, J. T. Epplen, P. Mathew, M. E. Mathews, D. J. Hulme, K. J. Beh, R. A. McGraw and C. W. Beattie. 1995. An autosomal genetic linkage map of sheep genome. Genetics. 140:703-724.
  22. Crow, J. F. 1993. How much do we know about spontaneous human mutation rates ? Environ. Mol. Mutagen. 21:122-129. https://doi.org/10.1002/em.2850210205
  23. Crooijmans, R. P. M. A., V. A. F. Bierbooms, J. Komen, J. J. Van der Poel and M. A. M. Groenen. 1997. Microsatellite markers in common carp (Cyprinus carpiol). Anim. Genet. 28:129-134. https://doi.org/10.1111/j.1365-2052.1997.00097.x
  24. Devlin, B., W. Risch and K. Rohrer. 1990. No excess of homozygosis at loci used for DNA fingerprinting. Science. 249:1416-1420. https://doi.org/10.1126/science.2205919
  25. Diez-Tascon, C., R. P. Littlejohn, P. A. R. Almeida and A. M. Crawford. 2000. Genetic variation within Merino sheep breeds: analysis of closely related populations using microsatellites. Anim. Genet. 31:243-251. https://doi.org/10.1046/j.1365-2052.2000.00636.x
  26. Ellegren, H. 2000a. Heterogenous mutation process in human microsatellite DNA process. Nat. Genet. 24:400-402. https://doi.org/10.1038/74249
  27. Ellegren, H. 2000b. Microsatellite mutations in the germline: implications for evolutionary influence. Trends Genet. 16:551-558. https://doi.org/10.1016/S0168-9525(00)02139-9
  28. Ellegren, H., B. P. Chaudhary, M. Johnsson, L. Marklund, M. Fredholm, I. Gustavson and L. Andersson. 1994. A primary linkage map of the porcine genome reveals a low rate of genetic recombination. Genetics. 137:1089-1100.
  29. Endow, S. A., M. L. Polan and J. G. Gall. 1975. Satellite DNA sequences of Drosophilla melongaster. J. Mol. Biol. 96:670-692. https://doi.org/10.1016/0022-2836(75)90145-X
  30. FAO. 1998. Swines. In: Secondary guidelines for development of national farm animal genetic resources management plans. Measurment of domestic animal diversity (MoDAD). Recommended microsatellite markers. FAO Publication, Rome. pp. 19-24.
  31. Fredholm, M. and A. K. Wintero. 1996. Efficient resolution of parentage in dogs by amplification of microsatellites. Anim. Genet. 27:19-23.
  32. Fredholm, M., A. K. Wintero, K. Christensen, B. Kristensen, P. B. Niehron, W. Davies and A. Archibald. 1993. Characterization of 24 porcine (dA-dC)n.(dT-dG)n microsatellites: genotyping of unrelated animals from four breeds and linkage studies. Mam. Genome. 4:187-192. https://doi.org/10.1007/BF00417561
  33. Gendrel, C. G., A. Boulet and M. Dutreix. 2000. (CA/GT)$_{(n)}$ microsatellites affect homologous recombination during yeast meiosis. Genes Dev. 14:1261-1268.
  34. Gerber, S., S. Meriette, R. Streiff, C. Bodenes and A. Kremer. 2000. Comparison of microsatellites and amplified fragment length polymorphism markers for parentage testing. Mol. Ecol. 9:1037-1048. https://doi.org/10.1046/j.1365-294x.2000.00961.x
  35. Goldstein, D. B. and C. Schlotterer. 1999. Microsatellites: Evolution and Applications. Oxford University Press.
  36. Goldstein, D. B. and D. D. Pollock. 1997. Launching microsatellites: a review of mutation processes and methods of phylogenetic inferences. J. Hered. 88:335-342. https://doi.org/10.1093/oxfordjournals.jhered.a023114
  37. Guerand, M., R. Mahla, D. Lagneaux, Y. Amigues, E. Palmer and J. Bezard. 1997. Parentage testing of day 10 equine embryos by amplified PCR analysis of microsatellites. Equine Vet. J. Suppl. 25:69-71. https://doi.org/10.1111/j.2042-3306.1993.tb02905.x
  38. Hamada, H., H. Seidman, B. H. Howard and C. M. Gorman. 1984a. Enhanced gene expression by the poly(dT-dG).poly (dC-dA) sequence. Mol. Cell. Biol. 4:2622-2630. https://doi.org/10.1128/MCB.4.12.2622
  39. Hamada, H., M. G. Petrino, T. Kakunaga, M. Seidman and B. D. Stoller. 1984b. Characterization of genomic poly(dT-dG).poly (dC-dA) sequences: structure, organization and conformation. Mol. Cell. Biol. 4:2610-2621. https://doi.org/10.1128/MCB.4.12.2610
  40. Hanniford, D. B. and D. E. Pulleyblank. 1983. Facile transition of poly d(TG).d(CA) into a left handed helix in physiological conditions. Nature. 302:632-634. https://doi.org/10.1038/302632a0
  41. Hasan, L., P. Vogeli, S. Neuenschwander, P. Stoll, E. Meijerink, C. Stricker, H. Jorg and G. Stranzinger. 1999. The L-gulonogamma-lactone oxidase gene (GULO) which is a candidate for vitamin C deficiency in pigs maps to chromosome 14. Anim. Genet. 30:309-312. https://doi.org/10.1046/j.1365-2052.1999.00481.x
  42. Hegelberg, E., I. C. Gray and A. J. Jefferys. 1991. Identification of skeletal remains of a murder victim by DNA analysis. Nature. 352:427-429. https://doi.org/10.1038/352427a0
  43. Heyen, D. W., J. E. Beever, Y. Da, R. E. Evert, C. Green, S. R. Bates, J. S. Ziegle and H. A. Lewin. 1997. Exclusion probabilities of 22 bovine microsatellite markers in fluorescent multiplexes for rumicatomated parentage testing. Anim. Genet. 28:21-27. https://doi.org/10.1111/j.1365-2052.1997.t01-1-00057.x
  44. Hirooka, H., D. J. deKoning, B. Harlizius, J. A. Van Arendonk, A. P. Rattink, M. A. Groehen, E.W. Brascamp and H. Bovenhius. 2001. A whole genome scan for quantitative trait loci affecting teat number in pigs. J. Anim. Sci. 79:2320-2326. https://doi.org/10.2527/2001.7992320x
  45. Hochgeschwender, V. and N. B. Brennan. 1991. Identifying the genes within the genome new ways for finding the needle in a haystack. BioAssays. 13:139-144. https://doi.org/10.1002/bies.950130308
  46. Jacob, H. J., K. Lindpaintner, S. E. Lincoln, K. Kusumi, R. K. Bunker, Y. P. Mao, D. Ganten, V. J. Dzan and E. S. Lander, 1991. Genetic mapping of a gene causing hypertension in the stroke prone spontaneously hypertensive rat. Cell. 67:213-224. https://doi.org/10.1016/0092-8674(91)90584-L
  47. Jafferys, A. J., V. Wilson and S. L. Thein. 1985. Hypervariable 'minisatellite' regions in human DNA. Nature. 314:67-73. https://doi.org/10.1038/314067a0
  48. Jarne, P. and P. J. L. Lagoda. 1996. Microsatellites from molecular to population and back. Trends Ecol. Evol. 11:424-429. https://doi.org/10.1016/0169-5347(96)10049-5
  49. Jelinek, W. R., R. P. Toomey, L. Leinwand, C. H. Kuncan, P. A. Biro, P. V. Choudary, S. M. Weissman, C. M. Rubin, C. M. Houck, P. L. Deininger and C. W. Schmid. 1980. Ubiquitous, interspersed repeated sequences in mammalian genomes. Proc. Natl. Acad. Sci. USA 77:1398-1402. https://doi.org/10.1073/pnas.77.3.1398
  50. Kappes, S. M., J. W. Keele, R. T. Stone, R. A. McGraw, T. S. Sonstegard, T. P. Smith, W. L. Lopez-Corrales and C. W. Beattie, 1997. A second generation linkage map of the bovine genome. Genome Res. 7:235-249. https://doi.org/10.1101/gr.7.3.235
  51. Kaul, R., N. Sheoran, M. S. Tantia, R. K. Vijh and R. Behl. 2001. Evaluation of genetic variability of 13 microsatellite markers in native Indian pigs. J. Genet. 80:149-153. https://doi.org/10.1007/BF02717911
  52. Kayser, M., L. Roewer, M. Hedman, L. Henke, J. Henke, S. Brauer, C. Kruger, M. Krawczak, M. Nagy, T. Dobosz, R. Szibor, P. de Nniff, M. Stoneking and S. Sujantita. 2000. Characterization and frequency of germline mutations at microsatellite loci from the human Y chromosome as revealed by direct observation in father/sonn pairs. Am. J. Human Genet. 66:1580-1588. https://doi.org/10.1086/302905
  53. Kimura, M. 1983. The neutral theory of evolution. Cambridge University Press.
  54. Klysik, J., S. M. Stirdivant, J. E. Larson, P. A. Hart and R. D. Wells. 1981. Left handed DNA in restriction fragments and a recombinant plasmid. Nature. 290:672-677. https://doi.org/10.1038/290672a0
  55. Kyuglyak, S., R. T. Durrett, M. D. Schug and C. F. Aquadro. 1998. Equilibrium distribution of microsatellite repeat length resulting from a balance between slippage events and point mutations. Proc. Natl. Acad. Sci. USA. 95:10774-10778. https://doi.org/10.1073/pnas.95.18.10774
  56. Laval, G., N. Iannucelli, C. Legault, D. Milan, M. A. M. Grocner, E. Giuffra, L. Andersson, P. H. Nissen, C. B. Jorgenson, P. Beeckmann, H. Geldermann, J. L. Foulley, C. Chevalet and L. Ollivier. 2000. Genetic diversity of eleven European pig breeds. Genet. Sel. Evol. 32:187-204. https://doi.org/10.1186/1297-9686-32-2-187
  57. Levinson, G. and G. A. Gutman. 1987. Stipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4:203-221.
  58. Li, K., Y. Chen., C. Moran, B. Fan, S. Zhao and Z. Peng. 2000a. Analysis of diversity and genetic relationships between four Chinese indigenous breeds and one Australian commercial pig breed. Anim. Genet. 31: 322-325. https://doi.org/10.1046/j.1365-2052.2000.00649.x
  59. Li, X, K. Li, B. Fan, Y. Gong, S. Zhao, Z. Peng and B. Liu. 2000b. The genetic diversity of seven pig breeds of China, estimated by means of mcirosatellites. Asian-Aus. J. Anim. Sci. 13:1193-1195. https://doi.org/10.5713/ajas.2000.1193
  60. Litt, M. and J. A. Luty. 1989. A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle action gene. Am. J. Human Genet. 44:397-401.
  61. Luikat, G., M. P. Biju-Duval, O. Ertugrul, Y. Zagdsuren, C. Maudet and P. Taberlet. 1999. Power of 22 microsatellite markers in fluorescent multiplexes for parentage testing in goats (Capra hircus). Anim. Genet. 30:431-438. https://doi.org/10.1046/j.1365-2052.1999.00545.x
  62. Mahtani, M. M. and H. F. Willard. 1993. A polymorphic X-linked tetranucleotide repeat locus displaying a high rate of mutation: implications for mechanisms of mutation and short tandem repeat loci. Human Mol. Genet. 2:431-437. https://doi.org/10.1093/hmg/2.4.431
  63. Malek, M., J. C. Dekkers, H. K. Lee, T. J. Baas and M. F. Rothschild. 2001a. A molecular genome scan analysis to identify chromosomal regions influencing economic traits in the pigs. 1. Growth and body composition. Mamm. Genome. 12:630-636. https://doi.org/10.1007/s003350020018
  64. Malek, M., J. C. Dekkers, H. K. Lee, T. J. Baas, K. Prura, E. Huff-Lonergan and M. F. Rothschild. 2001b. A molecular genome scan analysis to identify chromosomal regions influencing economic traits in pig Meat and muscle composition. Mamm. Genome. 12:637-645. https://doi.org/10.1007/s003350020019
  65. Marklund, L., A. K. Wintero, P. D. Thomron, M. Johansson, M. Fredholm, U. Gustafsson and L. Anderson. 1993. A linkage group of pig chromosome 4 comprising the loci for blood group L, GBA, ATPB1 and three microsatellites. Anim. Genet. 24:333-338. https://doi.org/10.1111/j.1365-2052.1993.tb00336.x
  66. Marklund, L., P. E. Wystrom, S. Stern, L. Andersson-Eklund and L. Andersson. 1999. Confined quantitative trait loci for fatness and growth on pig chromsome 4. Heredity. 82:134-141. https://doi.org/10.1038/sj.hdy.6884630
  67. Martinez, A. M., J. V. Delgarzo, A. Rodero and J. L. Vega-Pla. 2000. Genetic structure of Iberian pig breeds using microsatellites. Anim. Genet. 34:295-301. https://doi.org/10.1046/j.1365-2052.2000.00645.x
  68. Mikawa, S., T. Akita, H. Hisamatsu, Y. Inage, Y. Ito, E. Kobayashi, H. Kusumoto, T. Matsumoto, H. Mikami, M. Minezawa, M. Miyake, S. Shimanuki, C. Suigyama, Y. Uchida, Y. Wada, S. Yanai and H. Varue. 1999. A linkage map of 243 DNA markers in an intercross of Gottingen miniature and Meishan pigs. Anim. Genet. 30:407-417. https://doi.org/10.1046/j.1365-2052.1999.00493.x
  69. Naylor, L. H. and E. M. Clark. 1990. d(TG)n.d(CA)n sequences upstream of the rat prolactin gene from Z-DNA and inhibit gene transcription. Nucl. Acids Res. 18:1595-1601. https://doi.org/10.1093/nar/18.6.1595
  70. Niu, R., H. T. Shang, H. Wei, Z. B. Huang and Y. Z. Zeng. 2001. Genetic analysis of 35 microsatellite loci in 5 linkages of Xishuangbanna miniature pig inbred lines. Yi Chuan Xue Bao. 28:518-526.
  71. Nordheim, A. and A. Rich. 1983. Negatively supercoiled SV40 DNA contains Z-DNA segments within transcriptional enhancer sequences. Nature. 303:674-679. https://doi.org/10.1038/303674a0
  72. Nordheim, A., P. Tesser, F. Azorin, T. H. Kwon, A. Moller and A. Rich. 1982. Isolation of drossophila proteins that bind selectively to left handed DNA. Proc. Natl. Acad. Sci. USA. 79:7729-7933. https://doi.org/10.1073/pnas.79.24.7729
  73. Oshi, T., K. Tanaka and T. Tomita. 1990. Genetic variation of blood groups and biochemical polymorphism in Jinhua pigs (in Japanese) Jap. J. Swine Sci. 27:202-208. https://doi.org/10.5938/youton.27.202
  74. Paszek, A. A., G. H. Flickinger, L. Fontanesi, C. W. Beattie, G. A. Rohrer, L. Alexander and L. B. Schook. 1998a. Evaluating evolutionary divergene with microsatellites. J. Mol. Evol. 46:121-126. https://doi.org/10.1007/PL00006279
  75. Paszek, A. A., G. H. Flickinger, L. Fontanesi, G.A. Rohrer, L. Alexander, C. W. Beattie and L. B. Schook. 1998b. Livestock variation of linked microsatellite markers in diverse Swine breeds. Anim. Biotech. 9:55-66. https://doi.org/10.1080/10495399809525892
  76. Pearlman, R. E., N. Tsao and P. B. Moens. 1992. Synaptonemal complexes from DNase trated rat pachytene chromosomes contain (GT)n and LINE/SINE sequences. Genetics. 130:865-872.
  77. Peelman, L. J. 1999. Genetic investigation of the resistance mechanisms of the pig against diarrhea caused by E. coli. Verh. K. Acad. Geneskd. Belg. 61: 489-515.
  78. Peelman, L. J., F. Mortiaux, A. Van Zeveran, A. Danrercoer, G. Mommens, F. Coopman, Y. Bouquet, A. Borny, R. Renaville and D. Portetelle. 1998. Evaluation of the genetic variability of 23 bovine microsatellite markers in four Belgian cattle breeds. Anim. Genet. 29:161-167. https://doi.org/10.1111/j.1365-2052.1998.00280.x
  79. Poetsch, M., S. Seefeldt, M. Maschke and E. Lignitz. 2001. Analysis of microsatellite polymorphism in red deer, roe deer and fellow deer – possible employment in forensic applications. Forensic Sci. Int.116:1-8. https://doi.org/10.1016/S0379-0738(00)00337-6
  80. Prosser, J., M. Frommer, C. Paul and P. C. Vincent. 1986. Sequence relationships of three human satellite DNAs. J. Mol. Biol. 187:145-155. https://doi.org/10.1016/0022-2836(86)90224-X
  81. Rich, A., A. Nordheim and A. H. J. Wang. 1984. The chemistry and biology of left handed Z-DNA. Ann. Rev. Biochem. 53:791-846. https://doi.org/10.1146/annurev.bi.53.070184.004043
  82. Rogers, J. 1983. A straight LINE story. Nature. 306:113-114. https://doi.org/10.1038/306113a0
  83. Rogers, J. H. 1985. The origin and evolution of retrosposons. Int. Rev. Cytol. 93:187-279. https://doi.org/10.1016/S0074-7696(08)61375-3
  84. Rohrer, G. A., L. J. Alexander, C. W. Beattie, P. Wilkie, G. H. Flickinger, L. B. Schook, A. A. Parzek, L. Anderson, P. Mariani, L. Marklund, M. Fredholm, B. Hoyheim, A. L. Archibald, V. H. Nielsen, D. Milan and M. A. M. Groenen. 1997. A consensus linkage map for Swine chromosome 7. Anim. Genet. 28:223-229. https://doi.org/10.1111/j.1365-2052.1997.00116.x
  85. Rohrer, G. A., L. J. Alexander, J. W. Keele, T. P. Smith and C. W. Beattie. 1994. A microsatellite linkage map of the porcine genome. Genetics. 136:231-245.
  86. Saiki, R. K., D. H. Gelfland, S. Stoffel, S. J. Scharf, R. Higuchi, G. T. Horn, K. B. Mullis and H. A. Erlich. 1988. Primer directed amplification of DNA with a thermostable DNA polymerase. Science. 239:487-491. https://doi.org/10.1126/science.2448875
  87. Santoro, C., F. Costanzo and G. Ciliberto. 1984. Inhibition of eukaryotic and RNA transcription by potential Z-DNA sequences. EMBO J. 3:1553-1559.
  88. Schlotterer, C. 2000. Evolutionary dynamics of microsatellite DNA. Chromosoma. 109:365-371. https://doi.org/10.1007/s004120000089
  89. Schlotterer, C. and D. Tautz. 1992. Slippage synthesis of simple sequence DNA. Nucl. Acids Res. 20:211-215. https://doi.org/10.1093/nar/20.2.211
  90. Schmid, C. W. and W. R. Jelinek. 1982. The Alu family of dispersed repetitive sequences. Science. 216:1065-1070. https://doi.org/10.1126/science.6281889
  91. Schnabel, R. D., T. J. Ward and J. N. Derr. 2000. Validation of 15 microsatellites for parentage testing in North American bison, Bison bison and domestic cattle. Anim. Genet. 31:360-366. https://doi.org/10.1046/j.1365-2052.2000.00685.x
  92. Schultes, N. P. and J. W. Szostak. 1991. A poly(dA-dT) tract is a component of the recombination initiation site at the ARG4 locus in Saccharomyces cerevisiae. Mol. Cell. Biol. 11:322-328. https://doi.org/10.1128/MCB.11.1.322
  93. Singer, D. S., L. J. Parent and R. Ehrlich. 1987. Identification and DNA sequence of an interspersed repetitive element in the genome of the miniature swine. Nucl. Acids Res. 15:2780-2783. https://doi.org/10.1093/nar/15.6.2780
  94. Singer, M. F. 1982. Highly repeated sequences in mammalian genomes. Int. Rev. Cytol. 76:67-112. https://doi.org/10.1016/S0074-7696(08)61789-1
  95. Singer, M. F. and J. Skorownski. 1985. Making sense out of LINES : long interspersed nuclear sequences in mammalian genomes. Treds Biochem. Sci. 10:119-122. https://doi.org/10.1016/0968-0004(85)90271-3
  96. Smeets, H. J. M., R. Hermens, H. G. Brunner, H. H. Ropers and B. Wieringa. 1991. Identification of variable simple sequence motifs in 19q13.2-qter. markers for myotonic dystrophy locus. Genomics. 9:257-263. https://doi.org/10.1016/0888-7543(91)90250-I
  97. Soller, M. And J. S. Beckmann. 1983. Genetic polymorphism in varietal identification and genetic improvement. Theoret. Appl. Genet. 47:179-190. https://doi.org/10.1007/BF00278376
  98. Stallings, R. L. 1992. CpG suppression in vertebrate genome does not account for the variety of (CpG)n microsatellite repeats. Genomics. 17:890-891. https://doi.org/10.1016/0888-7543(92)90178-U
  99. Stallings, R. L., A. F. Ford, D. Nelson, D. C. Torney, C. E. Hildebrand and R. K. Moyzis. 1991. Evolution and distribution of (GT)n repetitive sequences in mammalian genomes. Genomics. 10:807-815. https://doi.org/10.1016/0888-7543(91)90467-S
  100. Starling, J. A., J. Maule, N. D. Hastie and R. C. Allshire. 1990. Extensive telomere repeat arrays in mouse are hypervariable. Nucl. Acids Res. 18:6881-6888. https://doi.org/10.1093/nar/18.23.6881
  101. Talbot, J., J. Haigh and Y. Plante. 1996. A parentage evaluation test in North American elk (Wapiti) using microsatellites of ovine and bovine origin. Anim. Genet. 27:117-119. https://doi.org/10.1111/j.1365-2052.1996.tb00480.x
  102. Tanaka, K., T. Oshi, Y. Kurosawa and S. Suzuki. 1983. Genetic relationship among several pig populations in East Asia analysed by blood group locus and serum protein polymorphisms. Anim. Blood Goups Biochem. Genet. 14:191-200.
  103. Vaiman, D., D. Mercier, K. Moazami-Goudarzi, A. Eggen, R. Ciampolini, A. Lepingle, R. Velmala, J. Kaukinen, S. L. Varvio and P. Martin. 1995. A set of 99 cattle microsatellites: characterization, synteny mapping and polymorphism. Mamm. Genome. 5:288-297. https://doi.org/10.1007/BF00389543
  104. Vaiman, D., L. Schibler, F. Bourgeois, A. Oustry, Y. Amigues and E. P. Cribin. 1996. A genetic linkage map of male goat genome. Genetics. 144:279-283.
  105. Van Zeveran A., Y. Bonquet, A. Van de Weghe and W. Coppieters. 1990a. A genetic blood marker study on 4 pig breeds. 1. Estimation and comparison of within-breed variation. J. Anim. Breed. Genet. 107:104-112. https://doi.org/10.1111/j.1439-0388.1990.tb00016.x
  106. Van Zeveran A., Y. Bonquet, A. Van de Weghe and W. Coppieters. 1990b. A genetic blood marker study on 4 pig breeds. 2. Genetic relationship between the populations. J. Anim. Breed. Genet. 107:113-118. https://doi.org/10.1111/j.1439-0388.1990.tb00017.x
  107. VanZeveran, A., L. Peelman, A. Van de Weghe and Y. Bouquet. 1995. A genetic study of four Belgian pig populations by means of seven microsatellite loci. J. Anim. Breed Genet. 112:191-204. https://doi.org/10.1111/j.1439-0388.1995.tb00558.x
  108. Vijh, R. K., R. Behl and R. Sahai. 1999. Microsatellite markers in horses-A review. Centaur. 16:36-43.
  109. Weber, J. L. and C. Wong. 1993. Mutation of short tandem repeats. Human Mol. Genet. 2:1123-1128. https://doi.org/10.1093/hmg/2.8.1123
  110. Weber, J. L. and P. E. May. 1989. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Human Genet. 44:388-396.
  111. Widar, J., M. Ansay and R. Hensel. 1975. Allozymic variations as an estimate of heterozygosity in Belgian pig breeds. Anim. Blood Groups Biochem. Genet. 6:221-234.
  112. Wimmers, K., S. Ponsukrili, T. Hardge, A. Valle-Zarate, P. K. Mathur and P. Horst. 2000. Genetic distinctness of African, Arian and South American local chickens. Anim. Genet. 31:159-165. https://doi.org/10.1046/j.1365-2052.2000.00605.x
  113. Wintero, A. K., M. Fredholm and L. Andersson. 1994. Assignment of gene for porcine insulin like growth factor 1 to chromosome 5 by linkage mapping. Anim. Genet. 25:37-39. https://doi.org/10.1111/j.1365-2052.1994.tb00401.x
  114. Wintero, A. K., M. Fredholm and P. D. Thomsen. 1992. Variable (dG-dT)$_{n}$.(dC-dA)$_{n}$ sequences in the porcine genome. Genomics. 12:281-288. https://doi.org/10.1016/0888-7543(92)90375-3
  115. Wu, X. L., C. Lee, J. Jiang, Y. L. Peng, S. L. Yang, B. N. Xiao, X. C. Liu and Q. C. Shi. 2001. Mapping a quantitative trait locus for growth and backfat on porcine chromosome 18. Asian-Aus. J. Anim. Sci. 14:1665-1669. https://doi.org/10.5713/ajas.2001.1665
  116. Yang, L., S. H. Zhao, K. Li, Z. Z. Peng and G. W. Montgomery. 1999. Determination of genetic relationships among five Chinese indigenous goat breeds with six microsatellite markers. Anim. Genet. 30:452-455. https://doi.org/10.1046/j.1365-2052.1999.00548.x

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