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Current Status of Bioinformatics on Bio-databases and it Tools

바이오데이터베이스와 도구를 활용한 바이오인포매틱스의 동향

  • Im, Dal-Hyuk (College of Engineering, Institute of Biotechnology Department of Bioscience and Biotechnology, Sejong University, BitzKorea Inc.) ;
  • Jeon, Sue-Kyoung (BitzKorea Inc.) ;
  • Park, Wan-Kyu (College of Engineering, Institute of Biotechnology Department of Bioscience and Biotechnology, Sejong University) ;
  • Lee, Young-Joo (College of Engineering, Institute of Biotechnology Department of Bioscience and Biotechnology, Sejong University)
  • 임달혁 (세종대학교 생명공학과, (주) 비츠 코리아) ;
  • 전수경 ((주) 비츠 코리아) ;
  • 박완규 (세종대학교 생명공학과) ;
  • 이영주 (세종대학교 생명공학과)
  • Published : 2004.02.20

Abstract

The union of information-technology and biology presents great possibilities to both applications of bio-information and development of science and technology. Also, meaningful analysis of bio-information brings about a new innovation in the field of bio-market with the advent and growth of bioinformatics. Hence, bioinformatics is the most import aspect for establishing a science-technology-oriented society in the $21^{st}$ century. This article provides trends in current state of bioinformatics. Technological development of bioinformatics for the rapid growth of bio-industry means that using bioinformatics, a biologist can process and store enormous amount of data such as current Human Genome Project and future data in the field of biology. We have manly looked at the tends of bio-information, databases and mining tools that are generally used, and strategies and directions for the future.

Keywords

References

  1. The British Council Website (http://www.britishcouncil.org.in/science), Celebrating 50 years since the discovery of DNA structure in the UK, British Council (2003)
  2. Erwin Chargaff Papers, American Philosophical Society (1993)
  3. N.M. Luscombe, D. Greenbaum and M. Gerstein, What is bioinformatics? An introduction and overview, IMIA Yearbook, (http://bioinfo. mbb.yale. edu/-nick/ bioinformaticsl) (2001)
  4. National Human Genome Research Institute website [http://www.genome.gov]
  5. B. Rybak, Bio-Informatics and Bio-Process in the Physiology of Communication, Biosciences Comm., 4, 158-159 (1978)
  6. D. Story, An Understandable Definition of Bioinformatics., News & Articles, OReilly Network Weblogs, Feb. 5, (2003)
  7. The OReilly website [http://www.oreilly.com/news/bioinformatics_0401.html]
  8. S.K Kim, The combination of biotechnology and technology information, Science and Technology Policy Institute, (2002)
  9. The National Center for Biotechnology Information website [http://www. ncbi.nlm.nih.gov]
  10. I. Iliopoulos, S. Tsoka, M.A. Andrade, P. Janssen, B. Audit, A.Tramontano, A. Valencia, C. Leroy, C. Sander and CA Ouzounis, Genome sequences and great expectations, Genome Bioi., 2, 1-3 (2001)
  11. IH. Park and KS. Han, Challenges and New Approaches in Genomics and Bioinformatics. Genomics & Informatics, 1, 16 (2003)
  12. EJ. Ko, Connection of biotechnology and information technology, LG Economic Week, 652, 22-27 (2001)
  13. B.M. Kwon and IH. Yu, Chemical genetics and chemical proteomics, Biochemistry News, 20, 12 (2000)
  14. C.K Huh, Role of bioinformatics in functional genomicse, Biochemistry News, 20, 1 (2000)
  15. EJ. Ko, Rising the usage of biotech, LG Economic Week, 678, 38-42 (2002)
  16. G. Cagney, S. Amiri, T. Premawaradena, M. Lindo and A. Emili, In silico proteome analysis to facilitate proteomics experiments using mass spectrometry, Pmteome Sci., 1, 5 (2003) https://doi.org/10.1186/1477-5956-1-5
  17. R. Overbeek, Genomics: What is realistically achievable?, Genome Bioi., 1, comment2002.1-2002.3 (2000)
  18. E.Y Kim, Bioinformatics, Korea Institute of Science and Technology Information (2003)
  19. European Bioinformatics Institution website [http://www.ebi.ac.uk/]
  20. DNA Data Bank of Japan website [http://www.ddbj.nig.ac.jpl]
  21. The Ensembl Genome Browser website [http://www.ensembl.org/]
  22. KH. Rhyu, Bioinformatics and database research direction in post-genome age, Korea Institute of Science and Technology Information, 12, 108-117 (2003)
  23. A. Karwath and R.D. King, Homology induction: The use of machine leaming to improve sequence similarity searches, BMC Bioinformatics, 3, 11-24 (2002) https://doi.org/10.1186/1471-2105-3-11
  24. S.P. Altschul, W. Gish, W. Miller, E.W. Myers and DJ. Lipman, Basic local alignment search tool, J. Mol. Biol., 215, 403-410 (1990) https://doi.org/10.1016/S0022-2836(05)80360-2
  25. A. Pertsemlidis and J.W. Fondon, Having a BLAST with bioinformatics (and avoiding BLASTphemy), Genome Biol., 2, reviews2002.1-2002.10 (2001)
  26. M. Lexa, J Horak and B. Brzobohaty, VIrtual PCR, Bioinformatics, 17, 192-193 (2001) https://doi.org/10.1093/bioinformatics/17.2.192
  27. P.E. Hodges, P.M. Carrico, J.D. Hogan, KE. O'Neill, J.J. Owen, M. Mangan, B.P. Davis, IE. Brooks and J.I. Garrels, Annotating the human proteome: the Human Proteome Survey Database (HumanPSD) and an in-depth target database for G protein-coupled receptors (GPCR-PD) from Incyte Genomics, Nucleic Acids Res., 30, 137-141 (2002) https://doi.org/10.1093/nar/30.1.137
  28. J.H. Graber, C.R. Cantor, S.C. Mohr and T.P. Smith, In silico detection of control signals: mRNA 3'-end-processing sequences in diverse species, Proc. Natl. Acad. Sci., 96, 14055-14060 (1999) https://doi.org/10.1073/pnas.96.24.14055
  29. J.S. Edwards, R.D. Ibarra and B.O. Palsson, In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data, Nat. Biotechnol., 19, 125-130 (2001) https://doi.org/10.1038/84379
  30. The LG economic research institute website [http://www.lgeri.com/]
  31. The InforMax website [http://www.informaxinc.com/content.cfm?pageid=1]
  32. The Biomax Informatics AG website [http://www.biomax.del]
  33. The Korea institute of science and technology information website [http://www.kisti.re.kr/kistilknowledge/knowledge_main.jsp?sub=3]
  34. The Bitzkorea website [http://www.bitzkorea.com]
  35. D. Rocco and T. Critchlow, Automatic discovery and classification of bioinformatics web sources. Bioinformatics, 19, 1927-1933 (2003) https://doi.org/10.1093/bioinformatics/btg353
  36. C.A. Semple, M.S. Taylor and S. Ballereau, The mesogenomic era. Genome Biol., 2, 4015 (2001)