Construction and Characterization of Vector Expressing Low Level of Translation Factor eIF5B

단백질합성인자 eIF5B의 저 발현 효모벡터의 제조 및 특성

  • Published : 2004.03.01

Abstract

eIF5B is a translation initiation factor that delivers Met-$tRNA^{Met}$ to AUG start codon and subsequently joins the small and large ribosomes. In order to study the function of eIF5B encoded by FUN12, we constructed FUN12 which lacked 5' end of its sequence. We found that this construct lacking almost all of its promoter in pRS plasmid partially complemented slow growth phenotype of fun12 deletion strain. Interestingly, this construct expressed N-terminally truncated eIF5B and its expression level was about 5% of that of wild type eIF5B. Low amount of the eIF5B expressed additionally in fun12 deletion strain played a direct role as a limiting factor for its growth. This limiting factor eIF5B in those strains also modulates activities of overall translation in vitro.

eIF5B는 단백질합성의 개시 인자로서 Met-$tRNA^{Met}$을 AUG 개시코돈에 전달하고, 리보솜의 두 소단위체 결합을 유도한다. 이 인자의 기능을 연구할 목적으로 eIF5B를 코딩하는 FUN12 유전자의 5'말단 부위를 삭제하는 연구를 수행하였다. 프로모터의 대부분을 삭제한 FUN12를 함유한 pRS효모벡터를 FUN12가 삭제되어 천천히 자라는 돌연변이주 ($fun12{\Delta}g$)에 전달하였을 때 그 표현형을 부분적으로 상보하였다. 위와 같이 제조된 벡터에서 N-말단이 상실된 eIF5B 단백질이 발현되었고, 그 양이 정상 균주에서 발현되는 eIF5B 양의 약 5%에 불과하였다. 이와 같이 부분적으로 성장을 상보한 균주에서 발현된 적은 양의 단백질합성개시 인자 eIF5B는 직접적으로 그 성장을 제한하는 요소로 작용한다. 이러한 균주에서 성장의 제한인자인 eIF5B는 in vitro 에서도 역시 전체 단백질 합성의 활성을 조절하였다.

Keywords

References

  1. EMBO J. v.12 A Saccharomyces cerevisiae homologue of mam-malian translation initiation factor 4B contributes to RNA helicase activity Altmann,M.;P.P.Muller;B.Wittmer;F.Ruchti;S.Lanker;H.Trachsel
  2. Science v.280 Promotion of $Met-tRNA_{i}^Met$ binding to ribosomes by yIF2, a bacterial IF2 Homolog in yeast Choi.S.K;J.H.Lee;W.L.Zoll;W.C.Merrick;T.E.Dever https://doi.org/10.1126/science.280.5370.1757
  3. Mol. Cell. Biol. v.20 Physical and functional interaction between the eukaryotic orthologs of prokaryotic translation initiation factors IF1 and IF2 Choi,S.K.;D.S.Olsen;A.Roll-Mecak;A.Martung;K.L.Remo;S.K.Burley;A.G.Hinnebusch;T.E,Dever https://doi.org/10.1128/MCB.20.19.7183-7191.2000
  4. Gene v.110 Multifunctional yeast high-copy-number shuttle vectors Christianson,T.W.;R.S.Sikorski;M.Dante;J.H.Shero;P.Hieter https://doi.org/10.1016/0378-1119(92)90454-W
  5. Cold Spring Harb. Symp. Quant. Biol v.66 Universal translation initiation factor IF2/eIF5B Dever,T.E.;A.Roll-Mecak;Choi,J.H.Lee;C.Cao;B.S.SHin;S.K.Burley https://doi.org/10.1101/sqb.2001.66.417
  6. J. Mol. Biol. v.25 On the number of genes and the identification of essntial genes using temperature-sensitive-lethal mutations Harris,S.D.;J.Cheng;T.A.Pugh;J.R.Pringle
  7. Pathway and mechanism of initiation of protein synthesis Hershey,J.W.;W.C.Merrick;N.Sonenberg(ed.)
  8. J. Cell Biol. v.115 An analysis of vertebrate mRNA sequences: Intimations of translational control Kozak,M. https://doi.org/10.1083/jcb.115.4.887
  9. J. Mol. Biol. v.220 A severely truncated from of translational initiation factor 2 supports growth of Escherichia coli Laalami,S.;H.Putzer;J.A.Plumbridge;M.Grunberg-Man-ago https://doi.org/10.1016/0022-2836(91)90017-Z
  10. Proc. Natl. Acad. Sci. v.96 Universal conservation in translation initiation revealed by human and archaeal homologs of bacterial translation initiation factor IF2 Lee,J.H.;S.K.Choi;A.Roll-Mecak;S.K.Burley;T.E.Dever https://doi.org/10.1073/pnas.96.8.4342
  11. Proc. natl. Acad. Sci. v.99 Initiation factor eIF5B catalyzes second GTP-dependent step in eukaryotic translation initiation Lee,J.H.;T.V.Pestova;B.S.Shin;C.Cao;S.K.Choi;T.E.Dever https://doi.org/10.1073/pnas.262569399
  12. Annu. Rev. Biochem. v.45 Translational control of protein synthesis Lodish,H.F. https://doi.org/10.1146/annurev.bi.45.070176.000351
  13. J. Biol. Chem. v.266 Insulin induction of ornithine decarboxylase. Importance of mRNA secondary structure and phosphorylation of eucaryotic initiation factors eIF-4B and eIF-4E Manzella,J.M.;W.Rychlik;R.E.Rhoads;J.W.Hershey;P.J.Blackshear
  14. Eur. J. Biochem. v.188 Characterization of the translational start site for IF2 beta, a short form of Escherichia coli initiation factor IF2 Morel-Deville,F.;G.Vachon;C.Sacerdot;A.J.Cozzone;M.Grunberg-Manago;Y.Cenatiempo https://doi.org/10.1111/j.1432-1033.1990.tb15441.x
  15. Nature v.403 The joining of ribosomal subunits in eukaryotes requires eIF5B Pestova,T.V.;I.B.Lomakin;J.H.Lee;S.K.Choi;T.E.Dever;C.U.Hellen https://doi.org/10.1038/35002118
  16. EMBO J. v.4 Two translational initiation sites in the infB gene are used to express initiation factor IF2 alpha and IF2 beta in Escherichia coli Plumbridge,J.A.;F.Deville;C.Sacerdot;H.U.Petersen;Y.Cenatiempo;A.Cozzone;M.Grunberg-Manago;J.W.Hershey
  17. RNA v.7 The requirement for eukaryotic initiation factor 4A (elF4A) in translation is in direct proportion to the degree mRNA 5' secondary structure Svitkin,Y.V.;A.Pause;A.Haghighat;S.Pyronnet;G.Witherell;G.J.Belsham;N.Sonenberg https://doi.org/10.1017/S135583820100108X