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말 데이터베이스 구축

HorseDB; an Integrated Horse Resource and Web Service

  • 김대수 (부산대학교 자연과학대학 생물정보학협동과정) ;
  • 조운종 (부산대학교 자연과학대학 생물정보학협동과정) ;
  • 허재원 (부산대학교 자연과학대학 생명과학부) ;
  • 최은상 (부산대학교 자연과학대학 생명과학부) ;
  • 조병욱 (부산대학교 생명자원과학대학 동물자원학과) ;
  • 김희수 (부산대학교 자연과학대학 생물정보학협동과정)
  • Kim Dae-Soo (PBBRC, Interdisciplinary Research Program of Bioinformatics, College of Natural Sciences, Pusan National University) ;
  • Jo Un-Jong (PBBRC, Interdisciplinary Research Program of Bioinformatics, College of Natural Sciences, Pusan National University) ;
  • Huh Jae-Won (Division of Biological Sciences, College Natural Sciences, Pusan National University) ;
  • Choe Eun-Sang (Division of Biological Sciences, College Natural Sciences, Pusan National University) ;
  • Cho Byung-Wook (Department of Animal Science, College of Life Sciences, Pusan National University) ;
  • Kim Heui-Soo (PBBRC, Interdisciplinary Research Program of Bioinformatics, College of Natural Sciences, Pusan National University)
  • 발행 : 2006.06.01

초록

공개된 데이터베이스들에서 말에 대한 생물학적인 데이터와 지놈 데이터를 분석하여 말 데이터베이스를 구축하였다. 말 데이터베이스는 말의 생물학적인 데이터와 지놈 데이터를 생물정보학적인 분석방법으로 분석하고 이들 데이터를 통합하여 제공하는데 목적을 두고 있다. 본 데이터베이스는 말의 생물학적 데이터와 지놈 분석 데이터 그리고 생물정보학적인 분석프로그램을 제공하는 인터페이스로 구성하였다. 또한 사용자의 편의를 돕기 위해서 쉽게 이용할 수 있도록 웹 메뉴를 구성 하였으며 말에 대한 다양한 정보를 제공할 수 있게 하였다. 말 데이터베이스를 이용할 수 있는 웹 주소는 http://www.primate.or.kr/horse이다.

We have built a database server called HorseDB which contains the genome annotation information and biological information for horse from public database entries. The aims of HorseDB are the integration of biological information and horse genome data on genome scale using bioinformatic methods. To facilitate the extraction of useful information among collected horse genome and biological data, we developed a user-friendly interface system, HorseDB; an Integrated Horse Resource and web Service. The database is categorized by the general horse information data, a sequence annotation data, and a world-wide web analysis program interface. The database also provides an easy access for user to find out the useful information within horse genomes and support analyzed information, such as sequence alignment and gene annotation results. HorseDB can be accessed at http://www.primate.or.kr./horse.

키워드

참고문헌

  1. Bennett, D .K. 1986. The origins of breeds. Equus 110:33, 11:37, 112:37
  2. Brinkmeyer-Langford, C., Raudsepp, T., Lee, E. J., Goh, G., Schaffer, A. A., Agarwala, R., Wagner, M. L., Tozaki, T., Skow, L. C., Womack, J. E., Mickelson, J. R., Chowdhary, B. P. 2005. A high-resolution physical map of equine homologs of HSA19 shows divergent evolution compared with other mammals. Mamm. Genome. 16 (8): 631-649 https://doi.org/10.1007/s00335-005-0023-1
  3. Theodosius Dobzhansky. 1951. Genetics and the Origin of Species, 3rd Ed. Columbia University Press, New York
  4. Guerin, G., Bailey, E., Bernoco, D., Anderson, I., Antczak, D. F., Bell, K., Binns, M. M., Bowling, A. T., Brandon, R., Cholewinski, G., Cothran, E. G., Ellegren, H., Forster, M., Godard, S., Horin, P., Ketchum, M., Lindgren, G., McPartlan, H., Meriaux, J-C., Mickelson, J. R., Millon, L. V., Murray, J., Neau, A., Roed, K., Sandberg, K., Shiue, Y-L., Skow, L. C.,. 1999. Report of the International Equine Gene Mapping Workshop: male linkage map. Animal Genetics. 30, 341-354 https://doi.org/10.1046/j.1365-2052.1999.00510.x
  5. Weinstock, J., Willerslev, E., Sher, A., Tong, W., Ho, Simon. Y. W., Rubenstein, D., Storer, J., Burns, Js., Martin, Ly., Bravi, C., Prieto, A., Froese, D., Scott, E., Xulong, L., Cooper, A. 2005. Evolution, Systematics, and Phylogeography of Pleistocene Horses in the New World: A Molecular Perspective. PLoS. Biol.3 (8): e241 https://doi.org/10.1371/journal.pbio.0030241
  6. MacFadden, B. J. 1992. Fossil Horses: Systematics, Paleobiology, and Evolution of the Family Equidae. New York, Cambridge University Press
  7. Radinsky, L. 1983. Allometry and reorganization in horse skull proportions. Science. 221 (16):1189-1191 https://doi.org/10.1126/science.221.4616.1189
  8. Renders, E. 1984. The gait of Hipparion sp. from fossil footprints in Laetoli, Tanzania. Nature. 308:179-181 https://doi.org/10.1038/308179a0
  9. Sorek, R., Ast, G., Graur, D. 2002 .Alu-containing exons are alternatively spliced. Genome Res. 12, 1060-1067 https://doi.org/10.1101/gr.229302