DOI QR코드

DOI QR Code

Genetic Diversity and Phylogenetic Analysis of the mtDNA D-loop Region in Tibetan Sheep

  • Wang, X. (College of Animal Science and Technology, Northwest A & F University Yangling) ;
  • Chen, H. (College of Animal Science and Technology, Northwest A & F University Yangling) ;
  • Lei, C. Z. (College of Animal Science and Technology, Northwest A & F University Yangling)
  • 투고 : 2006.01.09
  • 심사 : 2006.03.30
  • 발행 : 2007.03.01

초록

Seventeen haplotypes were detected from the complete mitochondrial DNA control region sequences analyzed from eighty individuals of two Tibetan domestic sheep breeds. The nucleotide composition of all the sequences was 33.0% A, 29.7%T, 22.9%C and 14.4%G; G+C was 37.3%. The length of the sequences ranged from 1,107 bp to 1,259 bp. The difference between them was primarily due to 3-5 copy numbers of a 75 bp tandem repeat sequence. The NJ phylogenetic tree (the number of replications of bootstrap test is 1,000) presented three major domestic sheep lineages, which suggested that modern Tibetan sheep breeds are derived from three maternal sources.

키워드

참고문헌

  1. Giuffra, E., J. M. H. Kijas, V. Amarger, O. Carlborg, J. T. Jeon and L. Andersson. 2000. The origin of the domestic pig: Independent domestication and subsequent introgression. Genetics. 154:1785-1791.
  2. Guo, J., L. X. Du, Y. H. Ma, W. J. Guan, H. B. Li, Q. J. Zhao, X. Li and S. Q. Rao. 2005. A novel maternal lineage revealed in sheep (Ovis aries). Anim. Genet. 36:331-336. https://doi.org/10.1111/j.1365-2052.2005.01310.x
  3. Kumar, S., K. Tamura, I. B. Jakobsen and M. Nei. 2001. Molecular evolutionary genetics analysis software (Version 2.1). Bioinformatics
  4. Li, Z. N. 1993. Breeding sheep in China. Agriculture press, Beijing, China.
  5. Hiendleder, S. 1998a. A low rate of replacement substitutions in two major Ovis aries mitochondrial genomes. Anim. Genet. 29:116-122. https://doi.org/10.1046/j.1365-2052.1998.00295.x
  6. Hiendleder, S., Bernhard Kaupe, Rudolf Wassmuth and Axel Janke. 2002. Molecular analysis of wild and domestic sheep questions current nomenclature and provides evidence for domestication from two different subspecies. Proc. R. Soc. Lond. B. 269:893-904 https://doi.org/10.1098/rspb.2002.1975
  7. Hiendleder, S., K. Mainz, Y. Plante and H. Lewalski. 1998b. Analysis of mitochondrial DNA indicates that domestic sheep are derived from two different ancestral maternal sources: no evidence for contributions from urial and argali sheep. J. Hered. 89:113-120. https://doi.org/10.1093/jhered/89.2.113
  8. Hiendleder, S., S. H. Phua and W. Hecht. 1999. A diagnostic assay discriminating between two major Ovis aries mitochondrial DNA haplogroups. Anim. Genet. 30:211-213. https://doi.org/10.1046/j.1365-2052.1999.00455.x
  9. Hiendleder, S., W. Hecht, V. Dzapo and Wassmuth. 1991. Ovine mitochondrial DNA: restriction enzyme analysis, mapping and sequencing data. Anim. Genet. 23:151-160. https://doi.org/10.1111/j.1365-2052.1992.tb00034.x
  10. Rozas, J., J. C. Sanchez-Delbarrio, X. Messeguer and R. Rozas. 2005. DNA Sequence Polymorphism Version 4.10.1.
  11. Sambrook, J., E. F. Fritsch and T. Maniatis. 2001. Molecular cloning: a laboratory manual (third edition). Cold Spring Harbor, New York: Cold spring Harbor Laboratory Press.
  12. Sasazaki, S., S. Odahara, C. Hiura, F. Mukai and Mannen, 2006. H. Mitchondrial DNA variation and genetic relationships in Japanese and Korean cattle. Asian-Aust. J. Anim. Sci. 19(10):1394-1398. https://doi.org/10.5713/ajas.2006.1394
  13. Sultana, S., H. Mannen and S. Tsuji. 2003. Mitochondrial DNA diversity of Pakistani goats. Anim. Genet. 34:417-421. https://doi.org/10.1046/j.0268-9146.2003.01040.x
  14. Tanaka, K., C. D. Solis, J. S. Masangkay, K. Maeda, Y. Kawamoto and T. Namikawa. 1996. Phylogenetic relationship among all living species of the genus Bubalus based on DNA sequences of the cytochrome b gene. Biochem. Genet. 34:443-452. https://doi.org/10.1007/BF00570125
  15. Tobias Polzin and Siavash Vahdati. 2004. Network4.1.0.8. Fluxus Technology Ltd.
  16. Upholt, W. B. and I. B. Dawid. 1977. Mapping of mitochondrial DNA of individual sheep and goats: rapid evolution in the D loop region. Cell 11:571-583. https://doi.org/10.1016/0092-8674(77)90075-7
  17. Watanabe, T., J. S. Masangkay, S. Wakana, N. Saitou and T. Tomita. 1989. Mitochondrial DNA polymorphism in native Philippine cattle based on restriction endonuclease cleavage patterns. Biochem. Genet. 27:431-438. https://doi.org/10.1007/BF02399672
  18. Wolf, C., J. Rentsch and P. Hubner. 1999. PCR-RFLP analysis of mitochondrial DNA: a reliable method for species identification. J. Agric. Food Chem. 7:1350-1355.
  19. Wood, N. J. and S. H. Phua. 1996. Variation in the control region sequence of the sheep mitochondrial genome. Anim. Genet. 27:25-33. https://doi.org/10.1111/j.1365-2052.1996.tb01173.x

피인용 문헌

  1. DNA Markers for the Genetic Diversity in Korean Native Chicken Breeds: A Review vol.43, pp.2, 2016, https://doi.org/10.5536/KJPS.2016.43.2.63
  2. Genetic Relationships among Different Breeds of Chinese Gamecocks Revealed by mtDNA Variation vol.22, pp.8, 2007, https://doi.org/10.5713/ajas.2009.80660
  3. Early history of Chinese domestic sheep indicated by ancient DNA analysis of Bronze Age individuals vol.38, pp.4, 2011, https://doi.org/10.1016/j.jas.2010.11.019
  4. Discrimination of Korean Native Chicken Populations Using SNPs from mtDNA and MHC Polymorphisms vol.24, pp.12, 2011, https://doi.org/10.5713/ajas.2011.11144
  5. Meta-analysis evidence of maternal lineages in Chinese Tibetan sheep using mtDNA D-loop panel vol.28, pp.4, 2017, https://doi.org/10.3109/24701394.2016.1143469
  6. Population structure and genetic relatedness of Sri Lankan Jaffna Local sheep with major South Indian breeds vol.206, pp.None, 2007, https://doi.org/10.1016/j.smallrumres.2021.106571