DOI QR코드

DOI QR Code

Population Structure and Biodiversity of Chinese Indigenous Duck Breeds Revealed by 15 Microsatellite Markers

  • Liu, W. (Department of Animal Genetics and Breeding, College of Animal Science and Technology China Agricultural University) ;
  • Hou, Z.C. (Department of Animal Genetics and Breeding, College of Animal Science and Technology China Agricultural University) ;
  • Qu, L.J. (Department of Animal Genetics and Breeding, College of Animal Science and Technology China Agricultural University) ;
  • Huang, Y.H. (State Key Laboratory for AgroBiotechnology, China Agricultural University) ;
  • Yao, J.F. (Department of Animal Genetics and Breeding, College of Animal Science and Technology China Agricultural University) ;
  • Li, N. (State Key Laboratory for AgroBiotechnology, China Agricultural University) ;
  • Yang, N. (Department of Animal Genetics and Breeding, College of Animal Science and Technology China Agricultural University)
  • 투고 : 2007.02.09
  • 심사 : 2007.08.26
  • 발행 : 2008.03.01

초록

Duck (Anas platyrhynchos) is one of the most important domestic avian species in the world. In the present research, fifteen polymorphic microsatellite markers were used to evaluate the diversity and population structure of 26 Chinese indigenous duck breeds across the country. The Chinese breeds showed high variation with the observed heterozygosity (Ho) ranging from 0.401 (Jinding) to 0.615 (Enshi), and the expected heterozygosity (He) ranging from 0.498 (Jinding) to 0.707 (Jingjiang). In all of the breeds, the values of Ho were significantly lower than those of He, suggesting high selection pressure on these local breeds. AMOVA and Bayesian clustering analysis showed that some breeds had mixed together. The FST value for all breeds was 0.155, indicating medium differentiation of the Chinese indigenous breeds. The FST value also indicated the short domestication history of most of Chinese indigenous ducks and the admixture of these breeds after domestication. Understanding the genetic relationship and structure of these breeds will provide valuable information for further conservation and utilization of the genetic resources in ducks.

키워드

참고문헌

  1. Bohonak, A. J. 2002. IBD (Isolation by Distance): a program for analyses of isolation by distance. J. Hered. 93:153-154. https://doi.org/10.1093/jhered/93.2.153
  2. Buchlolz, W. G., J. M. Pearce, B. J. Pierson and K. T. Scribner. 1998. Dinucleotide repeat polymorphisms in waterfowl (family Anatidae): characterization of a sex-linked (Z-specific) and 14 autosomal loci. Anim. Gene. 29:323-325.
  3. Excoffier, L., G. Laval and S. Schneider. 2005. Arlequin ver.3.0: An integrated software package for population genetics data analysis. Evolution Bioinformatics Online 1:47-50.
  4. Fulton, J. E. and M. E. Delany. 2003. Poultry Genetic Resources- Operation Rescue Needed. Sci. 300:1667-1668. https://doi.org/10.1126/science.1085407
  5. Harley, E. H., I. Baumgarten, J. Cunningham and C. O'Ryan. 2005. Genetic variation and population structure in remnant populations of black rhinoceros, Diceros bicornis, in Africa. Mol. Eco. 14:2981-2990. https://doi.org/10.1111/j.1365-294X.2005.02660.x
  6. Huang, Y. H., Y. H. Zhao, C. S. Haley, S. Q. Hu, J. P. Hao, C. X. Wu and N. Li. 2006. A genetic and cytogenetic map for the duck (Anas platyrhynchos). Genet. 173:287-296. https://doi.org/10.1534/genetics.105.053256
  7. Kong, H. S., J. D. Oh, J. H. Lee, K. J. Jo, B. D. Sang, C. H. Choi, S. D. Kim, S. J. Lee, S. H. Yeon, G. J. Jeon and H. K. Lee. 2006. Genetic variation and relationships of korean native chickens and foreign breeds using 15 microsatellite markers. Asian-Aust. J. Anim. Sci. 19:1546-1550. https://doi.org/10.5713/ajas.2006.1546
  8. Li, H., N. Yang, K. Chen, G. Chen, Q. Tang, Y. Tu, Y. Yu and Y. Ma. 2006. Study on molecular genetic diversity of native duck breeds in China. World's Poult. Sci. J. 62:603-611.
  9. Maak, S., K. Neumann, G. Lengerken and R. Gattermann. 2000. First seven microsatellites developed for the Peking duck (Anas platyrhynchos). Anim. Gene. 31:228-241. https://doi.org/10.1046/j.1365-2052.2000.031003228.x
  10. O'Brien, S. and J. Evermann. 1998. Interactive influence of infectious disease and genetic diversity in natural populations. Trends Eco. Evol. 3:254-259.
  11. Osman, S. A. M., M. Sekino, A. Nishihata, Y. Kobayashi, W. Takenaka, K. Kinoshita, T. Kuwayama, M. Nishibori, Y. Yamamoto and M. Tsudzuki. 2006. The genetic variability and relationships of japanese and foreign chickens assessed by microsatellite DNA profiling. Asian-Aust. J. Anim. Sci. 19: 1369-1378. https://doi.org/10.5713/ajas.2006.1369
  12. Park, S. D. E. 2001. Trypanotolerance in west african cattle and the population genetic effects of Selection. Ph.D. Thesis University of Dublin.
  13. Pritchard, J. K., M. Stephens and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genet. 155:945-959.
  14. Qu, L. J., X. Y. Li, G. F. Xu, K. W. Chen, H. J. Yang, L. C. Zhang, G. Q. Wu, Z. C. Hou, G. Y. Xu and N. Yang. 2006. Evaluation of genetic diversity in Chinese indigenous chicken breeds using microsatellite markers. Science in China, Ser. C. 36:17- 26.
  15. Rousset, F. 1997. Genetic differentiation of gene flow from Fstatistics under isolation by distance. Genet. 140:1413-1419.
  16. Scherf, B. D. 2000. World watch list for domestic animal diversity, 3th edition. FAO, Rome.
  17. Stai, S. M. and C. R. Hughes. 2003. Characterization of microsatellite loci in wild and domestic Muscovy ducks (Cairina moschata). Anim. Gene. 34:384-397. https://doi.org/10.1046/j.1365-2052.2003.01038.x
  18. Tu, Y. J., K. W. Chen, S. J. Zhang, Q. P. Tang, Y. S. Gao and N. Yang. 2006. Genetic diversity of 14 indigenous grey goose breeds in china based on microsatellite markers. Asian-Aust. J. Anim. Sci. 19:1-6.
  19. Xu, G. F. and K. W. Chen. 2003. Photograph album of China indigenous poultry breeds. Beijing: China Agricultural Press.

피인용 문헌

  1. Genetic structure of Eurasian and North American mallard ducks based on mtDNA data vol.43, pp.3, 2011, https://doi.org/10.1111/j.1365-2052.2011.02248.x
  2. Selection and Crossbreeding in Relation to Plumage Color Inheritance in Three Chinese Egg Type Duck Breeds (<i>Anas Platyrhynchos</i>) vol.27, pp.8, 2014, https://doi.org/10.5713/ajas.2013.13289
  3. Genetic Diversity Analysis of South and East Asian Duck Populations Using Highly Polymorphic Microsatellite Markers vol.29, pp.4, 2016, https://doi.org/10.5713/ajas.15.0915
  4. Genetic diversity and phylogenetic relationship analyzed by microsatellite markers in eight Indonesian local duck populations vol.32, pp.1, 2019, https://doi.org/10.5713/ajas.18.0055
  5. Genetic Diversity Analyses of Asian Duck Populations using 24 Microsatellite Markers vol.44, pp.2, 2008, https://doi.org/10.5536/kjps.2017.44.2.75