DOI QR코드

DOI QR Code

Molecular Phylogenetic Studies of Korean Hydrocotyle L.

한국산 피막이속(Hydrocotyle L.) 식물의 분자계통학적 연구

  • 최경수 (영남대학교 이과대학 생명과학과) ;
  • 박선주 (영남대학교 이과대학 생명과학과)
  • Received : 2012.06.15
  • Accepted : 2012.08.30
  • Published : 2012.08.29

Abstract

Phylogenetic analyses were conducted to evaluate relationships of 5 taxa of Korean Hydrocotyle, H. spp. found in the Ulleung island including one outgroup (Centella asiatica). The molecular phylogenetic methods based on nuclear ribosomal DNA ITS region and cpDNA trnH-psbA region. Centella asiatica was used outgroup for analysis. As the result, genus Korean Hydrocotyle were grouped by 94% bootstrap value. Korean Hydrocotyle was grouped by four clades; Clade I-H. maritima, H. sibthorpides and H. yabei clade Clade II-H. nepalensis clade clade III-H. ramiflora clade clade IV-H. spp. clade. H. maritima, H. sibthorpides and H. yabei was not distinguished, seperately. H. spp. was distinctly distinguished other Korean Hydrocotyle.

한국산 피막이속(Hydrocotyle L.)의 5종과 울릉도에서 새로 발견한 H. sp 그리고 outgroup인 병풀 (Centella asiatica)을 포함하여 총 7분류군을 대상으로 분자계통학적 연구를 수행하여 종의 실체 및 문제점을 검토하고 유연관계를 살펴보았다. 분자계통학적 연구의 marker로는 nrDNA의 ITS 지역과 cpDNA의 trnH-psbA지역을 사용하였다. 한국산 피막이속은 94%의 지지도로 묶였으며, 크게 4개의 분계조를 형성하였다. 선피막이 (H. maritima)와 피막이 (H. sibthorpioides), 제주피막이 (H. yabei)와 큰잎피막이 (H. nepalensis), 큰피막이 (H. ramiflora) 그리고 H. sp가 각각의 분계조를 형성하였다. 그러나 선피막이, 피막이, 제주피막이의 경우 독립된 분계조를 형성하지 않았으며, H. sp의 경우 분자적으로 독립적인 분계조를 형성하고 있어 새로운 종으로써의 가능성을 제시하였다.

Keywords

References

  1. Alvarez, I. and J.F. Wendel. 2003. Ribosomal ITS sequences and plant phylogenetic inference. Mol. Phylogen. Evol. 29:417-434. https://doi.org/10.1016/S1055-7903(03)00208-2
  2. Baldwin, B.G. 1992. Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants : An example from the Compositae. Mol. Phylogen. Evol. 1:3-16. https://doi.org/10.1016/1055-7903(92)90030-K
  3. Chung. T.H., B.S. Do, D.B. Lee and F.J. Lee. 1937. Nominia plantarum koreanum. Chosen Nat. Hist. Soc. Seoul, Korea. p. 136 (in Korean).
  4. Chung, T.H., B.S. Do, D.B. Lee and H.J. Sim. 1949. Nomina Plantarum Koreanum I, Chosen Biology Society pp. 54-55 (in Korean).
  5. Chung, T.H. 1957. Illustrated flora of Korea. Herb. Sinjisa pp. 88-98 (in Korean).
  6. Curtis, S. and M.T. Clegg. 1984. Molecular evolution of chloroplast DNA sequences. Mol. Biol. Evol. 1:291-301.
  7. Doyle, J.J. and J.L. Doyle. 1987. A rapid DNA isolation procedure of small quantities of fresh leaf tisse. Phytochem. Bull. Bot. Soc. Amer. 19:11-15.
  8. Farris, J.S., Albert V.A. Kllersjo M,Lipscomb D. and A.G. Kluge. 1996. Parsimony jacknifing outperforms neighbor-joining. Cladistics 12:99-124. https://doi.org/10.1111/j.1096-0031.1996.tb00196.x
  9. Felsenstein, J. 1985. Confidence limits on phylogeies: an approach using the bootstrap. Evolution 39:783-791. https://doi.org/10.2307/2408678
  10. Gregory, M. Plunkett and Antoine, N. Nicolas. 2009. The demise of subfamily Hydrocotyloideae (Apiaceae) and the re-alignment of its genera across the entire order Apiales. Mol. Phylogen. Evol. 53:134-151. https://doi.org/10.1016/j.ympev.2009.06.010
  11. Kim, K.J. and R.K. Jansen. 1994. Comparisons of phylogenetic hypotheses among different data sets in dwarf dandelions (Krigia, Asteraceae): Additional information from internal transcribed spacer sequences of nuclear ribosomal DNA. Plant Syst. Evol. 190:157-185.
  12. Kim, K.J, Y. D. Kim, J.H. Kim, S.J. Park, C.W. Park, B.Y. Sun, K.O. Yoo, B.H. Choi and S. T. Kim. 2008. Phylogenetic classification of Korean vascular flora according to the recent APG classification system. Korean J. Pl. Taxon 38:197-222 (in Korean).
  13. Kimura, M. 1980. A simple method for estimating evolutionary rates of base subsititution through comparative studies of nucleotide sequence. J. Mol. Evol. 16:111-120. https://doi.org/10.1007/BF01731581
  14. Korea National Arboretum and The Plant Taxonomic Society of Korea. 2007. A Synonymic List of Vascular Plants in Korea. Korea National Arboretum, Pocheon. Korea. p. 203 (in Korean).
  15. Lee, C.R. and H.S. Ahn. 1963. Nomina Plantarum Koreanum. Pahaksa, Publishing Co., Seoul. Korea. p. 469 (in Korean).
  16. Lee, T.B. 1980. Illustration flora of Korea. Hyangmunsa Publishing Co., Seoul. Korea. pp. 827-829 (in Korean).
  17. Lee, W.T. 1996. Lineamenta florae Koreae. Academy Publishing Co., Seoul, Korea. pp. 795-797 (in Korean).
  18. Linnaeus, C. 1753. Species Plantarum. Holmiae, Stockholm, Sweden. pp. 116.
  19. Lookerman, D.J. and R.K. Jansen. 1996. The use of herbarium material for DNA studies. In Sampling the green world. Stussey, T. J. and S. Sohmer (eds.), Columbia University Press, NewYork, USA. pp. 205-220.
  20. Mori, T. 1922. An Enumeration of plants Hithero known Corea. The government of Chosen. Seoul, Korea. p. 271.
  21. Nakai, T. 1914. Tyosen-syokuhtu. Seongmidang. Tokyo, Japan. pp. 39-46.
  22. Nakai, T. 1952. In A synoptical Sketch of Korean Flora. Bull. Natl. Sci. Mus. p. 87.
  23. Palibin, J. 1901. Consepectus Florae Koreaea III. Acta Hort. Petrop. p. 323.
  24. Sang, T., D.J. Crawford, T.F. Stuessy and O.M. Silva. 1994. ITS sequences and the phylogeny of the genus Robinsonia (Asteraceae). Syst. Bot. 20:55-64.
  25. Soltis, P.D., J.J. doyle and D.E. soltis. 1992. Molecular data and polyploid evolution in plants. In Molecular Systematics of Plant. Soltis, P.D., J. J. doyle and D. E. Soltis. (eds.), Chapman & Hall. NewYork, USA. pp. 177-201.
  26. Son, S.W., J.H. Kim, K.J. Kim and S.J. park. 2007. Molecular evidence for the hybridity of Ilex x wandoensis and the phylogenetic study of Korean Ilex based on ITS sequence data. Gene & Genomics 31(1): 53-63.
  27. Suh, Y., L.B. Thien, H.E. Reeve and E.A. Zimmer. 1993. Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of ribosomal DNA in Winteraceae. American J. Bot. 80:1042-1055. https://doi.org/10.2307/2445752
  28. Sworfford, D.L. 2002. PAUP* : Phylogenetic analysis usingparsimony (*and other methods), ver. 4.0. Sinauer Associates, Sunderland, MA, USA.
  29. Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins. 1997. The Clistal X windows interface : Flexible strategies for multiple sequence alignment aided by quality analysis tool. Nuc. Acids Res. 25:4876-4882. https://doi.org/10.1093/nar/25.24.4876
  30. Van De Wiel. C.C.M, J. Van Der Scoot, J.L.C.H. Van Valkenburg, H. Duistermaat and M.J.M. Smulders. 2009. DNA barcoding discriminates the noxious invasive plant species, floating pennywort (Hydrocotyle ranuncloides L.F.), from non-invasive relatives. Molecular Ecology Resources 9:1086-1091. https://doi.org/10.1111/j.1755-0998.2009.02547.x
  31. White, T.J., T. Birns, S.Lee, and J.Taylor. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR protocols : A guide to methods and applications, Innis, M., D. Gelfand, J. Sninsky and T. White (eds.), Academic Publishing Co., San Diego, USA. pp. 315-322.
  32. Yoo, K.P and S.J. Park. 2012. A Phylogenetic Study of Korean Carpesium L. Based on nrDNA ITS Sequence. Korean J. Plant. Res. 25(1):96-104. https://doi.org/10.7732/kjpr.2012.25.1.096