Animal Systematics, Evolution and Diversity

The Korean Society of Systematic Zoology (한국동물분류학회)
권호 표지
DOI QR코드

DOI QR Code

Population Genetic Structure of Carassius auratus (Pisces: Cypriniformes) in South Korea Inferred from AFLP Markers: Discordance with Mitochondrial Genetic Structure

  • Jung, Jongwoo (Department of Science Education, Ewha Womans University)
  • Received : 2012.09.10
  • Accepted : 2012.10.15
  • Published : 2013.01.31
Download PDF
⟨ Previous Next ⟩

Abstract

A recent study on the mitochondrial genetic variation of the Carassius auratus population in South Korea suggested that there are 3 distinct mitochondrial lineages in the country, and that they are geographically separated between westward rivers and southward rivers, respectively. In this study, the population genetic structure of amplified fragment length polymorphism (AFLP) of Carassius auratus was investigated. The results of analysis of molecular variance (AMOVA) supported the geographic distinction between westward and southward river populations, but only 3.66% of total genetic variance lies among these populations. The panmicticity of the AFLP genetic variation is backed up by the results of the neighbor-joining dendrogram drawn from a linearized pairwise $F_{ST}$ matrix and Bayesian clustering analysis. The discordance of genetic structure between mitochondrial and AFLP genetic variation may come from difference in effective population size between these markers and/or gene flow between westward and southward river populations through river capture events.

Keywords

References

  1. Bensch S, Akesson M, 2005. Ten years of AFLP in ecology and evolution: why so few animals? Molecular Ecology, 14:2899- 2914. https://doi.org/10.1111/j.1365-294X.2005.02655.x
  2. Duchesne P, Bernatchez L, 2002. AFLPOP: a computer program for simulated and real population allocation, based on AFLP data. Molecular Ecology Notes, 2:380-383. https://doi.org/10.1046/j.1471-8286.2002.00251.x
  3. Excoffier L, Laval G, Schneider S, 2005. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1:47-50.
  4. Hanfling B, Bolton P, Harley M, Carvalho GR, 2005. A mole-cular approach to detect hybridisation between crucian carp (Carassius carassius) and non-indigenous carp species (Carassius spp. and Cyprinus carpio). Freshwater Biology, 50:403-417. https://doi.org/10.1111/j.1365-2427.2004.01330.x
  5. Huelsenbeck JP, Andolfatto P, Huelsenbeck ET, 2011. structurama: Bayesian inference of population structure. Evolutionary Bioinformatics, 7:55-59.
  6. Jung J, Han H, Ryu SH, Kim W, 2010. Amplified fragment length polymorphism analysis and genetic variation of the pinewood nematode Bursaphelenchus xylophilus in South Korea. Animal Cells and Systems, 14:31-36. https://doi.org/10.1080/19768351003770889
  7. Jung J, Lee E, Kim W, 2007. Isolation and characterization of polymorphic trinucleotide microsatellites of the polyploidy crucian carp (Carassius auratus). Molecular Ecology Notes, 7:124-126.
  8. Jung J, Lee JW, Kim JP, Kim W, 2006. Genetic variations of the golden orb-web spider Nephila clavata (Araneae: Tetragnathidae) in Korea, using AFLP markers. Korean Journal of Genetics, 28:325-332.
  9. Jung J, Song KH, Lee E, Kim W, 2009. Mitochondrial genetic variations in fishes of the genus Carassius from South Korea: proximity to northern China rather than Japanese Islands? Hydrobiologia, 635:95-105. https://doi.org/10.1007/s10750-009-9866-x
  10. Meudt HM, Clarke AC, 2007. Almost forgotten or latest practice? AFLP applications, analyses and advances. Trends in Plant Science, 12:106-117. https://doi.org/10.1016/j.tplants.2007.02.001
  11. Murakami M, Fujitani H, 1997. Polyploid-specific repetitive DNA sequences from triploid ginbuna (Japanese silver crucian carp, Carassius auratus langsdorfi). Genes and Genetic Systems, 72:107-113. https://doi.org/10.1266/ggs.72.107
  12. Nam MM, Yang HJ, Seo BK, 1989. Morphological variation of the crucian carp, Carassius auratus (Linnaeus) from Yongnam area in Korea. Korean Journal of Ichthyology, 1:54-63 (in Korean).
  13. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S, 2011. MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28:2731-2739. https://doi.org/10.1093/molbev/msr121
  14. Toth B, Varkonyi E, Hidas A, Meleg EE, Varadi L, 2005. Genetic analysis of offspring from intra- and interspecific crosses of Carassius auratus gibelio by chromosome and RAPD analysis. Journal of Fish Biology, 66:784-797. https://doi.org/10.1111/j.0022-1112.2005.00644.x
  15. Weir BS, Cockerham CC, 1984. Estimating F-statistics for the analysis of population structure. Evolution, 38:1358-1370. https://doi.org/10.2307/2408641
  16. Yang SY, 1985. A study on the systematic status Korean crucian carp (Carassius auratus). Bulletin of the Institute for Basic Science Inha University, 6:155-161 (in Korean).

Cited by

  1. Detection of koi herpesvirus (KHV) in healthy cyprinid seed stock vol.112, pp.1, 2014, https://doi.org/10.3354/dao02784
  2. Significant population genetic structure detected in the rock bream Oplegnathus fasciatus (Temminck & Schlegel, 1844) inferred from fluorescent-AFLP analysis vol.34, pp.3, 2016, https://doi.org/10.1007/s00343-016-4404-y