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Genetic Diversity of the Original Plant for Taraxaci Herba, Taraxacum spp. by the Analysis of AFLP

AFLP 분석을 통한 포공영 기원식물 민들레의 유전 다양성 분석

  • Kim, Wook Jin (Basic Herbal Medicine Research Group, Herbal Medicine Research Division, Korea Institute of Oriental Medicine) ;
  • Moon, Byeong Cheol (Basic Herbal Medicine Research Group, Herbal Medicine Research Division, Korea Institute of Oriental Medicine) ;
  • Ji, Yunui (Basic Herbal Medicine Research Group, Herbal Medicine Research Division, Korea Institute of Oriental Medicine) ;
  • Lee, Young Mi (Basic Herbal Medicine Research Group, Herbal Medicine Research Division, Korea Institute of Oriental Medicine) ;
  • Kim, Ho Kyoung (Basic Herbal Medicine Research Group, Herbal Medicine Research Division, Korea Institute of Oriental Medicine)
  • 김욱진 (한국한의학연구원 한약연구본부 한약기초연구그룹) ;
  • 문병철 (한국한의학연구원 한약연구본부 한약기초연구그룹) ;
  • 지윤의 (한국한의학연구원 한약연구본부 한약기초연구그룹) ;
  • 이영미 (한국한의학연구원 한약연구본부 한약기초연구그룹) ;
  • 김호경 (한국한의학연구원 한약연구본부 한약기초연구그룹)
  • Received : 2013.04.08
  • Accepted : 2013.06.17
  • Published : 2013.08.30

Abstract

Collected germplasms of five representative dandelion species (Taraxacum ohwianum, T. platycarpum, T. platypecidum, T. officinale, and T. coreanum) were 104 lines from different habitates in Korea and China. Their genetic diversity was analyzed by genomic fingerprinting method using amplified fragment length polymorphism (AFLP). AFLP results of 6 primer combinations were revealed 1,176 total DNA fragments and 523 polymorphic bands with a 44.4% ratio of polymorphism. On the basis of similarity coefficient analysis by unweight pair group method with arithmetic averages (UPGMA), 104 dandelion germplasm lines were ranged from 0.64 to 0.99 and clustered distinct five group depending on the species. Furthermore, a principal coordinate analysis (PCA) by the application of multi-variate analysis indicated significantly greater differences among species than geographical origins.

Keywords

References

  1. Ahn YH, Park DS and Chung KH. (2003). Analysis of genetic relationship among native Taraxacum and naturalized Taraxacum species using RAPD. Korean Journal of Environment and Ecology. 17:169-176.
  2. Baker HG. (1974). The evolution of weeds. Annual Review of Ecology and Systematics. 5:1-24. https://doi.org/10.1146/annurev.es.05.110174.000245
  3. Bretting PK and Widrlechner MP. (1995). Genetic markers and horticultural germplasm management. Hort Science. 30:1349-1356.
  4. Chan GY and Kim HJ. (2011). Antimicrobial effects of extracts of Taraxacum officinale H. on Acnes strains. International Journal of Complementary, Integrative and Alternative Medicine. 7:3-16.
  5. Herbology Editorial Committee of Korean Medicine School. (2005). Herbology(Boncho-hak). Younglimsa. Seoul, Korea. p.245-247.
  6. Im DY and Lee KI. (2011). Nitric oxide production inhibitory and scavenging activity and tyrosinase inhibitory activity of extracts from Taraxacum officinale and Taraxacum coreanum. Korean Journal of Medicinal Crop Science. 19:362-367. https://doi.org/10.7783/KJMCS.2011.19.5.362
  7. Kang HS and Choi YM. (1998). Seasonal variation of reproductive characters in two introduced species of Taraxacum. Journal of Ecology and Field Biology. 21:475-486.
  8. Kang MJ, Seo YH, Kim JB, Shin SR and Kim KS. (2000). The chemical composition of Taraxacum officinale consumed in Korea. Korean Journal of Food and Cookery Science. 16:182-187.
  9. Kim BW, Sa KJ, Choi SH, Park KJ, Park JY and Lee JK. (2012). Analysis of the genetic relationship and population structure for colored maize lines using SSR markers. Korean Journal of Breeding Science. 44:301-311.
  10. Kim WJ, Kim DS, Kim SH, Kim JB, Goh EJ and Kang SY. (2010). Analysis of genetic similarity detected by AFLP and PCoA among genotypes of Kenaf(Hibiscus cannabinus L.). Journal of Crop Science and Biotechnology. 13:243-249. https://doi.org/10.1007/s12892-010-0092-x
  11. Kisiel W and Barszcz B. (2000). Further sesquiterpenoids and phenolics from Taraxacum officinale. Fitoterapia. 71:269273. https://doi.org/10.1016/S0367-326X(99)00158-6
  12. Korea Food and Drug Administration(KFDA). (2012). The Korean herbal pharmacopoeia. Korea Food and Drug Administration. Cheongwon, Korea. p.366-367.
  13. Kwon SJ, Lim KB, Lim MH, Park JY, Kim JA, Kim JS, Lee SS, Park BS and Jin YM. (2007). Molecular genetics of Brassicaceae based on AFLP display. Korean Journal of Horticultural Science and Technology. 25:75-81.
  14. Lee HH, Kim YS and Park HY. (2007). Plant regeneration via organogenesis from leaf explant culture of Taraxacum coreanum Nakai. Korean Journal of Medicinal Crop Science. 15:62-66.
  15. Lee HH and Lee SY. (2008). Cytotoxic and antioxidant effects of Taraxacum coreanum Nakai. and T. officinale WEB. extracts. Korean Journal of Medicinal Crop Science. 16:79-85.
  16. Lee MH, Song SH, Ham IH, Bu YM, Kim HC and Choi HY. (2010). Anti-inflammatory effect and contents from the aerial part and root of the various Taraxacum spp. distributed in Korea. Korean Journal of Herbology. 25:77-84.
  17. Lee TB. (1993). Illustrated flora of Korea. Hyangmunsa Publishing Co. Seoul, Korea. p.783-784.
  18. Leu YL, Wang YL, Huang SC and Shi LS. (2005) Chemical constituents from roots of Taraxacum formosanum. Chemical and Pharmaceutical Bulletin. 53:853-855. https://doi.org/10.1248/cpb.53.853
  19. Modaresi M and Resalatpour N. (2012). The effect of Taraxacum officinale hydroalcoholic extract on blood cells in mice. Advances in Hematology. 2012:1-4.
  20. Morales RG, Resende JT, Resende FV, Delatorre CA, Fiqueiredo AS and Da-Silva PR. (2013). Genetic divergence among Brazilian garlic cultivars based on morphological characters and AFLP markers. Genetics and Molecular Research. 12:270-281. https://doi.org/10.4238/2013.February.4.1
  21. Park SJ, Shin YH, Hwang SG, Lee YS, Lee JK and Jang CS. (2012). Genetic diversity and relationship of rice accessions using AFLP analysis. Journal of Agricultural, Life and Environmental Sciences. 24:1-6.
  22. Richards AJ. (1973). The origin of Taraxacum agamospecies. Botanical Journal of the Linnean Society. 66:189-211. https://doi.org/10.1111/j.1095-8339.1973.tb02169.x
  23. Ryu JH and Bae CH. (2011). Genetic diversity and relationship analysis of Taraxacum officinale Weber and Taraxacum coreanum Nakai accessions based on inter-simple sequence repeats(ISSR) markers. Korean Journal of Medicinal Crop Science. 19:149-156. https://doi.org/10.7783/KJMCS.2011.19.3.149
  24. Ryu JH and Bae CH. (2012). Genetic diversity and relationship analysis of genus Taraxacum accessions collected in Korea. Korean Journal of Plant Resources. 25:329-338. https://doi.org/10.7732/kjpr.2012.25.3.329
  25. Ryu JH, Choi GL, Lyu JI, Lee SC, Chun JU, Shin DY and Bae CH. (2010). Genetic relationship analysis of genus Nelumbo accessions based on inter-simple sequence repeats (ISSR). Korean Journal of Medicinal Crop Science. 18:86-92.
  26. Ryu JH, Seo KS, Kuk YI, Moon JH, Ma KH, Choi SK, Rha ES, Lee SC and Bae CH. (2012). Effects of LED(light-emitting diode) treatment on antioxidant activities and functional components in Taraxacum officinale. Korean Journal of Medicinal Crop Science. 20:165-170. https://doi.org/10.7783/KJMCS.2012.20.3.165
  27. Shin SR. (1999). Studies on the nutritional components of dandelion(Taraxacum officinale). Korean Journal of Postharvest Science and Technology. 6:495-499.
  28. Van Der Hulst RGM, Mes THM, Den Nijs JCM and Bachmann K. (2000). Amplified fragment length polymorphism (AFLP) markers reveal that population structure of triploid dandelions(Taraxacum officinale) exhibits both clonality and recombination. Molecular Ecology. 9:1-8. https://doi.org/10.1046/j.1365-294x.2000.00704.x
  29. Vos P and Kuiper M. (1996). AFLP analysis. In Caetano-Anolls G and Gresshoff PM (eds.). DNA markers: Protocols, applications, and overviews. Wiley-VCH. Weinheim, Germany. p.115-131.
  30. Yang HS. (1995). Studies of environmental responses in interspecific competition of ecotypes of Taraxacum officinale. Korean Journal of Environmental Biology. 13:107-120.
  31. Zhang X, Xiong H and Liu L. (2012). Effects of taraxasterol on inflammatory responses in lipopolysaccharide-induced RAW 264.7 macrophages. Journal of Ethnopharmacology. 141:206-211. https://doi.org/10.1016/j.jep.2012.02.020

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