References
- Abe, T., Saburi, J., Hasebe, H., Nakagawa, T., Kawamura, T., Saito, K., Nade, T., Misumi, S., Okumura, T., Kuchida, K., Hayashi, T., Nakane, S., Mitsuhasi, T., Nirasawa, K., Sugimoto, Y. and Kobayashi, E. (2008). Bovine quantitative trait loci analysis for growth, carcass, and meat quality traits in an F2 population from a cross between Japanese Black and Limousin. Journal of Animal science, 86, 2821-2832. https://doi.org/10.2527/jas.2007-0676
- Barendse, W., Harrison, B. E., Bunch, R. J. and Thoma, M. B. (2008). Variation at the Calpain 3 gene is associated with meat tenderness in zebu and composite breeds of cattle. BMC Genetics, 9, 41-48.
- Barrett, J. C., Fry, B., Maller, J. and Daly, M. J. (2005). Haploview : Anaylsis and visualization of LD and haplotype maps. Bioinformatics, 21, 263-265. https://doi.org/10.1093/bioinformatics/bth457
- Barton, L., Kott, T., Bures, D., Rehak, D., Zahradkova, R. and Kottova, B. (2009). The polymorphism of stearoyl-CoA desaturase (SCD1) and sterol regulatory element binding proyein-1 (SREBP-1) genes and their association with the fatty acid profile of muscle and subcutaneous fat in Fleckvieh bulls. Meat Science, 9, 309-330.
- Chung, K. Y., Lunt, D. K., Kawachi, H., Yano, H. and Smith, S. B. (2007). Lipogenesis and stearoyl-CoA desaturase gene expression and enzyme activity in adipose tissue of short- and long-fed Angus and Wagyu steers fed corn- or hay-based diets. Journal of Animal Science, 85, 380-387. https://doi.org/10.2527/jas.2006-087
- Craig, D. W. and Stephan, D. A. (2005). Applications of whole genome high-density SNP genotyping. Expert Review of Molecular Diagnostics, 5, 159-170. https://doi.org/10.1586/14737159.5.2.159
- de Bakker, P. I., Yelensky, R., Pe'er, I., Gabriel, S. B., Daly, M. J. and Altshuler, D. (2005). Efficiency and power in genetic association studies. Nature Genetics, 37, 1217-1223. https://doi.org/10.1038/ng1669
- Dinh, T. T. N., Blanton, J. R., Riley, D. G., Chase, C. C., Coleman, S. W., Phillips, W. A., Brooks, J. C., Miller, M. F. and Thompson, L. D. (2010). Intramuscular fat and fatty acid composition of longissimus muscle from divergent pure breeds of cattle. Journal of Animal science, 88, 756-766. https://doi.org/10.2527/jas.2009-1951
- Falconer, D. S. (1989). Introduction to quantitative genetics, 3rd ed. Longman Scientific & Technical, Harlow, United Kingdom.
- Gabriel, S. B., Schaffner, S. F., Nguyen, H., Moore, J. M., Roy, J., Blumenstiel, B., Higgins, J., DeFelice, M., Lochner, A., Faggart, M., Liu-Cordero, S. N., Rotimi, C., Adeyemo, A., Cooper, R., Waed, R., Lander, E. S., Daly, M. J. and Altshuler, D. (2002). The structure of haplotype blocks in the human genome. Sciences, 296, 2225-2229. https://doi.org/10.1126/science.1069424
- Gotoda, T., Yamada, N., Kawamura, M., Kozaki, K., Mori, N., Ishibashi, S., Shimano, H., Takaku, F., Yazaki, Y. and Furuichi, Y. (1991). Heterogeneous mutations in the human lipoprotein lipase gene in patients with familial lipoprotein lipase deficiency. Journal of Clinical Investigation, 88, 1856-1864. https://doi.org/10.1172/JCI115507
- Hedrick, P. W. (1987). Gametic disequilibrium measures: Proceed with caution. Genetics, 117, 331-341.
- Hoashi, S., Ashida, N., Ohsaki, H., Utsugi, T., Sasazaki, S., Taniguchi, M., Oyama, K., Mukai, F. and Mannen, H. (2007). Genotype of bovine sterol regulatory element binding protein-1(SREBP-1) is associated with fatty acid composition in Japanese Black cattle. Mammalian Genome, 18, 880-886. https://doi.org/10.1007/s00335-007-9072-y
- Horton, J. D., Shah, N. A., Warrington, J. A., Anderson, N. N., Park, S. W., Brown, M. S. and Goldstein, J. L. (2003). Combined analysis of oligonucleotide microarray data from transgenic and knockout mice identifies direct SREBP target genes. Proceedings of the National Academy of Sciences, 100, 12027-12032. https://doi.org/10.1073/pnas.1534923100
- Ibi, T., Hirooka, H., Kahi, A. K., Sasae Y. and Sasaki, Y. (2005). Genotype environment interaction effects on carcass traits in Japanese Black cattle. Journal of Animal Science, 83, 1503-1510. https://doi.org/10.2527/2005.8371503x
- Kim, S. W., Lee, J. H., Won, Y. S., Kim, N. S. and Kim, K. S. (2010). Effect of the fatty acid synthase gene for beef quantity traits in Hanwoo breeding stock. Journal of Animal Science, 52, 9-16.
- Korea Animal Genetics & Breeding Lab. (2003). Animal breeding studies, Sunjin-Munwha Publishing Co, Seoul, Korea.
- Lee, H., Lee, M. H. and Chung, M. S. (1994). Comparison of flavor characteristics and palatability of beef obtained from various breeds. Korean Journal for Food Science of Animal Resources, 26, 500-506.
- Lee, H., Lee, S. H., Cho, Y. M., Yoon, H. B., Jeon, B. K., Oh, S. J., Kwon, M. S. and Yoon, D. H. (2004). Association between the polymorphism on intron 5 of the lipoprotein lipase gene and carcass traits in Hanwoo (Korean cattle). Journal of Animal Science and Technology, 46, 947-956. https://doi.org/10.5187/JAST.2004.46.6.947
- Lee, J., Jin, M., Lee., Y., Ha, J., Yeo, J. and Oh, D. (2014). Gene-gene interaction of fatty acid synthase (FASN) using multifactor dimensionality reduction method in Korean cattle. Molecular Biology Reports, 41, 2021-2027. https://doi.org/10.1007/s11033-014-3050-8
- Lee, J., Lee, Y., Lee, J., Oh, D., Jeong, D. and Kim, J. (2013a). Identification of Single Nucleotide Polymorphisms (SNPs) of the Bovine Growth Hormone (bGH) Gene associated with growth and carcass traits in Hanwoo. Asian-Australasian Journal of Animal Sciences, 26, 1359-1364. https://doi.org/10.5713/ajas.2013.13248
- Lee, J., Lee, J., Yeo, Y., Kim, J. (2013b). A SNP harvester analysis to better detect SNPs of CCDC158 gene that are associated with carcass quality traits in Hanwoo. Asian-Australasian Journal of Animal Sciences, 26, 766-771. https://doi.org/10.5713/ajas.2012.12715
- Lee, Y., Oh, D., Lee, J., La, B. and Yeo, J. (2013c). Novel single nucleotide polymorphism of bovine SREBP1 gene IA asociation with fatty acid composition and marbling score in commercial Korean cattle (Hanwoo). Molecular Biology Reports, 40, 247-254. https://doi.org/10.1007/s11033-012-2055-4
- Mannen, H. (2011). Identification and utilization of genes associated with beef qualities. Animal Science Journal, 82, 1-7. https://doi.org/10.1111/j.1740-0929.2010.00845.x
- Matsuhashi, T., Maruyama, S., Uemoto, Y., Kobayashi, N., Mannen, H., Abe, T., Sakaguchi, S. and Kobayashi, E. (2011). Effects of bovine fatty acid synthase, stearoyl-coenzyme A desaturase, sterol regulatory element-binding protein 1, and growth hormone gene polymorphisms on fatty acid composition and carcass traits in Japanese Black cattle. Journal of Animal Science, 89, 12-22. https://doi.org/10.2527/jas.2010-3121
- Melton, S. L., Amiri, M., Davis, G. W. and Backus, W. R. (1982). Flavor and chemical characteristics of ground beef from grass-, forage-, grain- and grain-finished steers. Journal of Animal Science, 55, 77-87. https://doi.org/10.2527/jas1982.55177x
- Michal, J. J., Zhang, Z. W., Gaskins, C. T., and Jiang, Z. (2006). The bovine fatty acid binding protein 4 gene is significantly associated with marbling and subcutaneous fat depth in Wagyu x Limousin F2 crosses. Animal Genetics, 37, 400-402. https://doi.org/10.1111/j.1365-2052.2006.01464.x
- Monson, F., Sanudo, C. and Sierra, I. (2005). Influence of breed and ageing time on sensory meat quality and consumer acceptability in intensively reared beef. Meat Science, 71, 471-479. https://doi.org/10.1016/j.meatsci.2005.04.026
- Oh, D. Y. (2014). Identification of the SNP within candidate gene associated with fatty acid composition in Hanwoo, Ph.D. Thesis, Yeungnam University, Kyungbuk.
- Oh, D., Jin, M. H., Lee, Y. S., Ha, J. J., Kim, B. K., Yeo, J. S. and Lee, J. Y. (2013a). Identification of Stearoyl-CoA desaturase (SCD) gene interactions in Korean native cattle based on the multifactor -dimensionality reduction method. Asian-Australasian Journal of Animal Sciences, 26, 1218-1228. https://doi.org/10.5713/ajas.2013.13058
- Oh, D., La, B., Lee, Y., Bun, Y., Lee, J., Yeo, G. and Yeo, J. (2013b). Identification of novel single nucleotide polymorphisms (SNPs) of the lipoprotein lipase (LPL) gene associated with fatty acidcomposition in Korean cattle. Molecular Biology Reports, 40, 3155-3163. https://doi.org/10.1007/s11033-012-2389-y
- Ohsaki, H., Thnaka, A., Hoashi, S., Sasazaki, S., Oyama, K., Taniguchi, M., Mukai, F. and Mannen, H. (2009). Effect of SCD and SREBP genotypes on fatty acid composition in adipose tissue of Japanese Black cattle herds. Journal of Animal Science, 80, 225-232. https://doi.org/10.1111/j.1740-0929.2009.00638.x
- Perez-Enciso, M and Misztal, I. (2004). Qxpak: A versatile mixed model application for genetical genomics and QTL analyses. Bioinformatics, 20, 2792-2798. https://doi.org/10.1093/bioinformatics/bth331
- Rosenson, R. S. (2007). Effects of peroxisome proliferator-activated receptors on lipoprotein metabolism and glucose control in type 2 diabetes mellitus. The American Journal of Cardiology, 199, 96-104.
- Scheet, P. and Stephens, M. (2006). A fast and flexible statistical model for large-scale population genotype data : Applications to inferring missing genotypes and haplotypic phase. The American Journal of Human Genetics, 78, 629-644. https://doi.org/10.1086/502802
- Snelling, W. M., Casas, E., Stone, R. T., Keele, J. W., Harhay, G. P., Bennett, G. L. and Smith, T. P. L. (2005). Linkage mapping bovine EST-based SNP. BMC Genomics, 6, 74-83. https://doi.org/10.1186/1471-2164-6-74
- Storey, J. (2003). The positive false discovery rate : A Bayesian interpretation and the q-value. The Annals of Statistics, 31, 2013-2035. https://doi.org/10.1214/aos/1074290335
- Taniguchi, M., Utsugi, T., Oyama, K., Mannen, H., Kobayashi, M., Tanabe, Y., Ogino, A. and Tsuji, S. (2004). Genotype of stearoyl-CoA desaturase is associated with fatty acid composition in Japanese black cattle. Mammalian Genome, 14, 142-148.
- Tsuji, S. (2008). Kobe beef as international brand. In Symposium of Gyeungbuk Hanwoo Cluster, Daegu, Korea.
- Vreeland, W. N., Meagher, R. J. and Barron, A. E. (2002). Multiplexed, highthroughput genotype by single base extension and endlabeled free solution electrophoresis. Analytical Chemistry, 74, 4328-4333. https://doi.org/10.1021/ac0258094
- Waldman, R. C., Suess, G. G., Lewis, R. W., Bray, R. W. and Brungardt, V. H. (1965). Certain fatty acids of bovine tissue and their association with carcass characteristics. Journal of Animal Science, 24, 869.
- Wang, N., Akey, J. M., Zhang, K., Chakraborty, R. and Jin, L. (2002). Distribution of recombination crossovers and the origin of haplotype blocks: The interplay of population history, recombination, and mutation. American Journal of Human Genetics, 71, 1227-34. https://doi.org/10.1086/344398
- Yoshimura, T. and Namikawa, K. (1983). Influence of breed, sex and anatomical location on lipid and fatty acid composition of bovine subcutaneous fat. Japanese Journal of Zootechnical Science, 54, 97-100.
- Zhang, S., Knight, T. J., Reecy, J. M. and Beitz, D. C. (2008). DNA polymorphisms in bovine fatty acid synthase are associated with beef fatty acid composition. Animal Genetics, 39, 62-70. https://doi.org/10.1111/j.1365-2052.2007.01681.x
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