References
- Ahn, J.S., Park, B.K., Kim, Y.J., Hong, B.C., Ra, C.S., Kim, M.J., and Shin, J.S. 2016. Effects of fermentation using microorganisms on feed value of Astragalus membranaceus by-products. Ann. Anim. Resour. Sci. 27, 44-56. https://doi.org/10.12718/AARS.2016.27.1.44
- Bankevich, A., Nurk, S., Antipov, D., Gurevich, A.A., Dvorkin, M., Kulikov, A.S., Lesin, V.M., Nikolenko, S.I., Pham, S., Prjibelski, A.D., et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19, 455-477. https://doi.org/10.1089/cmb.2012.0021
- Grissa, I., Vergnaud, G., and Pourcel, C. 2007. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res. 35, W52-W57. https://doi.org/10.1093/nar/gkm360
- Kim, E.B., Jin, G.D., Lee, J.Y., and Choi, Y.J. 2016. Genomic features and niche-adaptation of Enterococcus faecium strains from Korean soybean-fermented foods. PLoS One 11, e0153279. https://doi.org/10.1371/journal.pone.0153279
- Kopit, L.M., Kim, E.B., Siezen, R.J., Harris, L.J., and Marco, M.L. 2014. Safety of the surrogate microorganism Enterococcus faecium NRRL B-2354 for use in thermal process validation. Appl. Environ. Microbiol. 80, 1899-1909. https://doi.org/10.1128/AEM.03859-13
- Liu, B. and Pop, M. 2009. ARDB-antibiotic resistance genes database. Nucleic Acids Res. 37, D443-D447. https://doi.org/10.1093/nar/gkn656
- Martin, M. 2011. Cutadapt removes adapter sequences from highthroughput sequencing reads. EMBnet. J. 17, 11-13.
- Overbeek, R., Olson, R., Pusch, G.D., Olsen, G.J., Davis, J.J., Disz, T., Edwards, R.A., Gerdes, S., Parrello, B., Shukla, M., et al. 2014. The SEED and the rapid annotation of microbial genomes using subsystems technology (RAST). Nucleic Acids Res. 42, D206-D214. https://doi.org/10.1093/nar/gkt1226
- Ruiz, L., Margolles, A., and Sanchez, B. 2013. Bile resistance mechanisms in Lactobacillus and Bifidobacterium. Front. Microbiol. 4, 396.
- Sung, H.G. 2013. Effects of fermented phytogenics on fecal odour and performance in laying hens. Ann. Anim. Resour. Sci. 24, 29-37. https://doi.org/10.12718/AARS.2013.24.1.29
- Yeo, S., Lee, S., Park, H., Shin, H., Holzapfel, W., and Huh, C.S. 2016. Development of putative probiotics as feed additives: validation in a porcine-specific gastrointestinal tract model. Appl. Environ. Microbiol. 100, 10043-10054.
Cited by
- Determination of Optimized Growth Medium and Cryoprotective Additives to Enhance the Growth and Survival of Lactobacillus salivarius vol.28, pp.5, 2018, https://doi.org/10.4014/jmb.1801.01059