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A Novel Recombined Potato virus Y Isolate in China

  • Han, Shuxin (College of Agricultural, Northeast Agricultural University) ;
  • Gao, Yanling (College of Agricultural, Northeast Agricultural University) ;
  • Fan, Guoquan (Virus-free Seeding Research Institute of Heilongjiang Academy of Agricultural Sciences) ;
  • Zhang, Wei (College of Agricultural, Northeast Agricultural University) ;
  • Qiu, Cailing (Virus-free Seeding Research Institute of Heilongjiang Academy of Agricultural Sciences) ;
  • Zhang, Shu (Virus-free Seeding Research Institute of Heilongjiang Academy of Agricultural Sciences) ;
  • Bai, Yanju (Virus-free Seeding Research Institute of Heilongjiang Academy of Agricultural Sciences) ;
  • Zhang, Junhua (College of Agricultural, Northeast Agricultural University) ;
  • Spetz, Carl (Norwegian Institute of Bieconomy Research)
  • Received : 2016.09.13
  • Accepted : 2017.05.20
  • Published : 2017.08.01

Abstract

This study reports the findings of a distinct Potato virus Y (PVY) isolate found in Northeast China. One hundred and ten samples (leaves and tubers) were collected from potato plants showing mosaic symptoms around the city of Harbin in Heilongjiang province of China. The collected tubers were planted and let to grow in a greenhouse. New potato plants generated from these tubers showed similar symptoms, except for one plant. Subsequent serological analyses revealed PVY as the causing agent of the disease. A novel PVY isolate (referred to as HLJ-C-44 in this study) was isolated from this sample showing unique mild mosaic and crisped leaf margin symptoms. The complete genome of this isolate was analyzed and determined. The results showed that HLJ-C-44 is a typical PVY isolate. Phylogenetic analysis indicated that this isolate belongs to the N-Wi strain group of PVY recombinants ($PVY^{N-Wi}$) and also shared the highest overall sequence identity (nucleotide and amino acid) with other members of this strain group. However, recombination analysis of isolate HLJ-C-44 revealed a recombination pattern that differed from that of other $PVY^{N-Wi}$ isolates. Moreover, biological assays in four different potato cultivars and in Nicotiana tabacum also revealed a different phenotypic response than that of a typical $PVY^{N-Wi}$ isolate. This data, combined, suggest that HLJ-C-44 is a novel PVY recombinant with distinct biological properties.

Keywords

References

  1. Ali, M. C., Maoka, T., Natsuaki, T. and Natsuaki, K. T. 2010a. $PVY^{NTN-NW}$, a novel recombinant strain of Potato virus Y predominating in potato fields in Syria. Plant Pathol. 59:31-41. https://doi.org/10.1111/j.1365-3059.2009.02174.x
  2. Ali, M. C., Maoka, T., Natsuaki, K. T. and Natsuaki, T. 2010b. The simultaneous differentiation of Potato virus Y strains including the newly described strain PVY(NTN-NW) by multiplex PCR assay. J. Virol. Methods 165:15-20. https://doi.org/10.1016/j.jviromet.2009.12.010
  3. Beczner, L., Horvath, J., Romhanyi, I. and Forster, H. 1984. Etiology of tuber ringspot disease in potato. Potato Res. 27:339-352. https://doi.org/10.1007/BF02357646
  4. Chrzanowska, M. 1991. New isolates of the necrotic strain of Potato virus Y ($PVY^N$) found recently in Poland. Potato Res. 34:179-182. https://doi.org/10.1007/BF02358039
  5. Chung, B. Y., Miller, W. A., Atkins, J. F. and Firth, A. E. 2008. An overlapping essential gene in the Potyviridae. Proc. Natl. Acad. Sci. U.S.A. 105:5897-5902. https://doi.org/10.1073/pnas.0800468105
  6. Fan, G. 2010. Potato virus M purification method and its antiserum preparation. Acta Phytophylacica Sin. 12:44.
  7. Gao, F., Chang, F., Shen, J., Shi, F., Xie, L. and Zhan, J. 2014. Complete genome analysis of a novel recombinant isolate of Potato virus Y from China. Arch. Virol. 159:3439-3442. https://doi.org/10.1007/s00705-014-2184-2
  8. Gao, F. L., Chang, F., Shen, J. G., Xie, L. H. and Zhan, J. S. 2015. Complete genome analysis of a $PVY^{NTN-NW}$ recombinant isolate from Yulin of China. Sci. Agric. Sinica 48:270-279.
  9. Gao, F. L., Shen, J. G., Shi, F. Y., Fang, Z. G., Xie, L. H. and Zhan, J. S. 2013. Detection and molecular variation of Potato virus Y CP gene in China. Sci. Agric. Sinica 46:3125-3133.
  10. Glais, L., Tribodet, M. and Kerlan, C. 2002. Genomic variability in Potato potyvirus Y (PVY): evidence that PVY(N)W and PVY(NTN) variants are single to multiple recombinants between PVY(O) and PVY(N) isolates. Arch. Virol. 147:363-378. https://doi.org/10.1007/s705-002-8325-0
  11. Gray, S., Boer, S. D., Lorenzen, J., Karasev, A., Whitworth, J., Nolte, P., Singh, R., Boucher, A. and Xu, H. 2010. Potato virus Y: an evolving concern for potato crops in the United States and Canada. Plant Dis. 94:1384-1397. https://doi.org/10.1094/PDIS-02-10-0124
  12. Hu, X., Nie, X., He, C. and Xiong, X. 2011. Differential pathogenicity of two different recombinant PVY(NTN) isolates in Physalis floridana is likely determined by the coat protein gene. Virol. J. 8:207. https://doi.org/10.1186/1743-422X-8-207
  13. Jones, R. A. C. 1990. Strain group specific and virus specific hypersensitive reactions to infection with potyviruses in potato cultivars. Ann. Appl. Biol. 117:93-105. https://doi.org/10.1111/j.1744-7348.1990.tb04198.x
  14. Karasev, A. V. and Gray, S. M. 2013. Continuous and emerging challenges of Potato virus Y in potato. Annu. Rev. Phytopathol. 51:571-586. https://doi.org/10.1146/annurev-phyto-082712-102332
  15. Lu, D. Q., Qiu, C. L., Wang, S. P., Yong, L. I. and Gao, Y. F. 2009. Development of cDNA dimeric probes and its application in diagnosis of potato spindle tuber viroid. Acta Horticulturae Sinica 36:1538-1544.
  16. Martin, D. and Rybicki, E. 2000. RDP: detection of recombination amongst aligned sequences. Bioinformatics 16:562-563. https://doi.org/10.1093/bioinformatics/16.6.562
  17. Mcdonald, J. G. and Singh, R. P. 1996a. Host range, symptomology, and serology of isolates of Potato virus Y (PVY) that share properties with both the $PVY^N$ and $PVY^O$ strain groups. Am. Potato J. 73:309-315. https://doi.org/10.1007/BF02855210
  18. Mcdonald, J. G. and Singh, R. P. 1996b. Response of potato cultivars to North American isolates of PVYNTN. Am. Potato J. 73:317-323. https://doi.org/10.1007/BF02855212
  19. Nichol, S. T., Beaty, B. J., Elliott, R. M., Goldbach, R., Plyusnin, A., Schmaljohn, C. S. and Tesh, R. B. 2005. Virus taxonomy:Classification and nomenclature of viruses. In: 8th Report of the International Committee on Taxonomy of Viruses, eds. by M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger and L. A. Ball, pp. 695-716. Elsevier-Academic Press, Oxford, UK.
  20. Nie, X. and Singh, R. P. 2003. Evolution of North American PVY(NTN) strain Tu 660 from local PVY(N) by mutation rather than recombination. Virus Genes 26:39-47. https://doi.org/10.1023/A:1022326021195
  21. Nolte, P., Whitworth, J. L., Thornton, M. K. and Mcintosh, C. S. 2007. Effect of seedborne Potato virus Y on performance of Russet Burbank, Russet Norkotah, and Shepody potato. Plant Dis. 88:248-252.
  22. Ogawa, T., Tomitaka, Y., Nakagawa, A. and Ohshima, K. 2008. Genetic structure of a population of Potato virus Y inducing potato tuber necrotic ringspot disease in Japan; comparison with North American and European populations. Virus Res. 131:199-212. https://doi.org/10.1016/j.virusres.2007.09.010
  23. Ohshima, K., Sako, K., Hiraishi, C., Nakagawa, A., Matsuo, K., Ogawa, T., Shikata, E. and Sako, N. 2000. Potato tuber necrotic ringspot disease occurring in Japan: its association with Potato virus Y necrotic strain. Plant Dis. 84:1109-1115. https://doi.org/10.1094/PDIS.2000.84.10.1109
  24. Ohshima, K., Yamaguchi, Y., Hirota, R., Hamamoto, T., Tomimura, K., Tan, Z., Sano, T., Azuhata, F., Walsh, J. W., Fletcher, J., Chen, J., Gera, A. and Gibbs, A. 2002. Molecular evolution of Turnip mosaic virus: evidence of host adaptation, genetic recombination and geographical spread. J. Gen. Virol. 83:1511-1521. https://doi.org/10.1099/0022-1317-83-6-1511
  25. Piche, L. M., Singh, R. P., Nie, X. and Gudmestad, N. C. 2004. diversity among Potato virus Y isolates obtained from potatoes grown in the United States. Phytopathology 94:1368-1375. https://doi.org/10.1094/PHYTO.2004.94.12.1368
  26. Riechmann, J. L., Laín, S. and García, J. A. 1992. Highlights and prospects of potyvirus molecular biology. J. Gen. Virol. 73:1-16. https://doi.org/10.1099/0022-1317-73-1-1
  27. Riechmann, J. L., Cervera, M. T. and Garcia, J. A. 1995. Processing of the plum pox virus polyprotein at the P3-6K1 junction is not required for virus viability. J. Gen. Virol. 76:951-956. https://doi.org/10.1099/0022-1317-76-4-951
  28. Romancer, M. L., Kerlan, C. and Nedellec, M. 1994. Biological characterisation of various geographical isolates of Potato virus Y inducing superficial necrosis on potato tubers. Plant Pathol. 43:138-144. https://doi.org/10.1111/j.1365-3059.1994.tb00563.x
  29. Saenz, P., Cervera, M. T., Dallot, S., Quiot, L., Quiot, J. B., Riechmann, J. L. and Garcia, J. A. 2000. Identification of a pathogenicity determinant of Plum pox virus in the sequence encoding the C-terminal region of protein P3+6K(1). J. Gen. Virol. 81:557-566. https://doi.org/10.1099/0022-1317-81-3-557
  30. Singh, R. P., Valkonen, J. P., Gray, S. M., Boonham, N., Jones, R. A., Kerlan, C. and Schubert, J. 2008. Discussion paper:The naming of Potato virus Y strains infecting potato. Arch. Virol. 153:1-13. https://doi.org/10.1007/s00705-007-1059-1
  31. Spetz, C. and Valkonen, J. P. 2004. Potyviral 6K2 protein longdistance movement and symptom-induction functions are independent and host-specific. Mol. Plant-Microbe Interact. 17:502-510. https://doi.org/10.1094/MPMI.2004.17.5.502
  32. van den Heuvel, J. F. J. M., van der Vlugt, R. A. A., Verbeek, M., de Haan, P. T. and Huttinga, H. 1994. Characteristics of a resistance-breaking isolate of Potato virus Y causing potato tuber necrotic ringspot disease. Eur. J. Plant Pathol. 100:347-356. https://doi.org/10.1007/BF01876445
  33. Wang, F., Gao, Z.-l., An, M.-n., Zhou, B.-g. and Wu, Y.-h. 2013. Sequencing and phylogenetic analysis of Potato virus Y liaoning isolate in China. J. Integr. Agric. 12:1195-1200. https://doi.org/10.1016/S2095-3119(13)60442-6
  34. Whitworth, J. L., Nolte, P., Mcintosh, C. and Davidson, R. 2006. Effect of Potato virus Y on yield of three potato cultivars grown under different nitrogen levels. Plant Dis. 90:73-76. https://doi.org/10.1094/PD-90-0073
  35. Zhang, S., Yang, J., Wang, F., Qian, Y., Shen, L. and Wang, Y. 2011. Sequencing and analysis of $PVY^N$ strain in tobacco from Guizhou province. Chinese Tobacco Science 32:47-51.

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  1. in Potato Production Areas in Northeast China vol.103, pp.2, 2019, https://doi.org/10.1094/PDIS-04-18-0687-RE