References
- Bankevich, A., Nurk, S., Antipov, D., Gurevich, A.A., Dvorkin, M., Kulikov, A.S., Lesin, V.M., Nikolenko, S.I., Pham, S., Prjibelski, A.D., et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19, 455-477. https://doi.org/10.1089/cmb.2012.0021
- Bao, E., Jiang, T., and Girke, T. 2014. AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references. Bioinformatics 30, i319-i328. https://doi.org/10.1093/bioinformatics/btu291
- Cho, E., Park, S.N., Lim, Y.K., Shin, Y., Paek, J., Hwang, C.H., Chang, Y.H., and Kook, J.K. 2015. Fusobacterium hwasookii sp. nov., isolated from a human periodontitis lesion. Curr. Microbiol. 70, 169-175. https://doi.org/10.1007/s00284-014-0692-7
- Dzink, J.L., Sheenan, M.T., and Socransky, S.S. 1990. Proposal of three subspecies of Fusobacterium nucleatum Knorr 1922: Fusobacterium nucleatum subsp. nucleatum subsp. nov., comb. nov.; Fusobacterium nucleatum subsp. polymorphum subsp. nov., nom. rev., comb. nov.; and Fusobacterium nucleatum subsp. vincentii subsp. nov., nom. rev., comb. nov. Int. J. Syst. Bacteriol. 40, 74-78. https://doi.org/10.1099/00207713-40-1-74
- Gharbia, S.E. and Shah, H.N. 1989. Glutamate dehydrogenase and 2-oxoglutarate reductase electrophoretic patterns and deoxyribonucleic acid-deoxyribonucleic acid hybridization among human oral isolates of Fusobacterium nucleatum. Int. J. Syst. Bacteriol. 39, 467-470. https://doi.org/10.1099/00207713-39-4-467
- Gharbia, S.E. and Shah, H.N. 1990. Heterogeneity within Fusobacterium nucleatum, proposal of four subspecies. Lett. Appl. Microbiol. 10, 105-108. https://doi.org/10.1111/j.1472-765X.1990.tb00276.x
- Haffajee, A.D. and Socransky, S.S. 1994. Microbial etiological agents of destructive periodontal diseases. Periodontology 2000 5, 78-111. https://doi.org/10.1111/j.1600-0757.1994.tb00020.x
- Han, Y.W. 2015. Fusobacterium nucleatum: a commensal-turned pathogen. Curr. Opin. Microbiol. 23, 141-147. https://doi.org/10.1016/j.mib.2014.11.013
- Kook, J.K., Park, S.N., Lim, Y.K., Cho, E., Jo, E., Roh, H., Shin, Y., Paek, J., Kim, H.S., Kim, H., et al. 2017. Genome-based reclassification of Fusobacterium nucleatum subspecies at the species level. Curr. Microbiol. 74, 1137-1147. https://doi.org/10.1007/s00284-017-1296-9
- Luo, R., Liu, B., Xie, Y., Li, Z., Huang, W., Yuan, J., He, G., Chen, Y., Pan, Q., Liu, Y., et al. 2012. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 1, 18. Erratum in: Gigascience 2015. 4, 30. https://doi.org/10.1186/2047-217X-1-18
- Otto, T.D., Sanders, M., Berriman, M., and Newbold, C. 2010. Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology. Bioinformatics 26, 1704-1707. https://doi.org/10.1093/bioinformatics/btq269
- Park, S.N., Lim, Y.K., and Kook, J.K. 2013. Development of quantitative real-time PCR primers for detecting 42 oral bacterial species. Arch. Microbiol. 195, 473-482. https://doi.org/10.1007/s00203-013-0896-4
- Strauss, J., White, A., Ambrose, C., McDonald, J., and Allen-Vercoe, E. 2008. Phenotypic and genotypic analyses of clinical Fusobacterium nucleatum and Fusobacterium periodonticum isolates from the human gut. Anaerobe 14, 301-309.