References
- Angiuoli SV, Gussman A, Klimke W, Cochrane G, Field D, Garrity G, Kodira CD, Kyrpides N, Madupu R, Markowitz V, et al. 2008. Toward an online repository of standard operating procedures (SOPs) for (meta)genomic annotation. OMICS 12, 137-141. https://doi.org/10.1089/omi.2008.0017
- Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19, 455-477. https://doi.org/10.1089/cmb.2012.0021
- Gauthier G, Gauthier M, and Christen R. 1995. Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations. Int. J. Syst. Bacteriol. 45, 755-761. https://doi.org/10.1099/00207713-45-4-755
- Grissa I, Vergnaud G, and Pourcel C. 2007. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res. 35, W52-57. https://doi.org/10.1093/nar/gkm360
- Ivanova EP, Ng HJ, and Webb HK. 2014. The family Pseudoalteromonadaceae, pp. 575-582. In Rosenberg E, DeLong EF, Lory S, Stackebrandt E, and Thompson F. (eds.), The prokaryotes: Gammaproteobacteria. Springer, Berlin, Heidelberg, Germany.
- Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, and Tyson GW. 2015. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res. 25, 1043-1055. https://doi.org/10.1101/gr.186072.114
- Zhou Y, Liang Y, Lynch KH, Dennis JJ, and Wishart DS. 2011. PHAST: a fast phage search tool. Nucleic Acids Res. 39, W347-352. https://doi.org/10.1093/nar/gkr485