DOI QR코드

DOI QR Code

Influence of Temperature on the Bacterial Community in Substrate and Extracellular Enzyme Activity of Auricularia cornea

  • Zhang, Xiaoping (Soil and Fertilizer Institute, Sichuan Academy of Agriculture Sciences) ;
  • Zhang, Bo (Soil and Fertilizer Institute, Sichuan Academy of Agriculture Sciences) ;
  • Miao, Renyun (Soil and Fertilizer Institute, Sichuan Academy of Agriculture Sciences) ;
  • Zhou, Jie (Soil and Fertilizer Institute, Sichuan Academy of Agriculture Sciences) ;
  • Ye, Lei (Soil and Fertilizer Institute, Sichuan Academy of Agriculture Sciences) ;
  • Jia, Dinghong (Soil and Fertilizer Institute, Sichuan Academy of Agriculture Sciences) ;
  • Peng, Weihong (Soil and Fertilizer Institute, Sichuan Academy of Agriculture Sciences) ;
  • Yan, Lijuan (Aquatic Geomicrobiology, Institute of Biodiversity, Friedrich Schiller University) ;
  • Zhang, Xiaoping (Department of Microbiology, College of Resources, Sichuan Agricultural University) ;
  • Tan, Wei (Soil and Fertilizer Institute, Sichuan Academy of Agriculture Sciences) ;
  • Li, Xiaolin (Soil and Fertilizer Institute, Sichuan Academy of Agriculture Sciences)
  • 투고 : 2018.04.13
  • 심사 : 2018.05.19
  • 발행 : 2018.09.01

초록

Temperature is an important environmental factor that can greatly influence the cultivation of Auricularia cornea. In this study, lignin peroxidase, laccase, manganese peroxidase, and cellulose in A. cornea fruiting bodies were tested under five different temperatures ($20^{\circ}C$, $25^{\circ}C$, $30^{\circ}C$, $35^{\circ}C$, and $40^{\circ}C$) in three different culture periods (10 days, 20 days and 30 days). In addition, the V4 region of bacterial 16S rRNA genes in the substrate of A. cornea cultivated for 30 days at different temperatures were sequenced using next-generation sequencing technology to explore the structure and diversity of bacterial communities in the substrate. Temperature and culture days had a significant effect on the activities of the four enzymes, and changes in activity were not synchronized with changes in temperature and culture days. Overall, we obtained 487,694 sequences from 15 samples and assigned them to 16 bacterial phyla. Bacterial community composition and structure in the substrate changed when the temperature was above $35^{\circ}C$. The relative abundances of some bacteria were significantly affected by temperature. A total of 35 genera at five temperatures in the substrate were correlated, and 41 functional pathways were predicted in the study. Bacterial genes associated with the membrane transport pathway had the highest average abundance (16.16%), and this increased at $35^{\circ}C$ and $40^{\circ}C$. Generally, different temperatures had impacts on the physiological activity of A. cornea and the bacterial community in the substrate; therefore, the data presented herein should facilitate cultivation of A. cornea.

키워드

참고문헌

  1. Sheu F, Chien PJ, Chien AL, et al. Isolation and characterization of an immunomodulatory protein (APP) from the jew's ear mushroom Auricularia polytricha. Food Chem. 2004;87:593-600. https://doi.org/10.1016/j.foodchem.2004.01.015
  2. Zhang D, Zheng Y. An introduction of the current studies on basidiomycete fungus Auricularia polytricha. Southwest China J Agric Sci. 2004;17:668-673.
  3. Ghorai S, Banik SP, Verma D, et al. Fungal biotechnology in food and feed processing. Food Res Int. 2009;42:577-587. https://doi.org/10.1016/j.foodres.2009.02.019
  4. Du P, Cui BK, Dai YC. Genetic diversity of wild Auricularia polytricha in Yunnan province of south-western China revealed by sequence-related amplified polymorphism (SRAP) analysis. J Med Plant Res. 2011;5:1374-1381.
  5. Yoon SJ, Yu MA, Pyun YR, et al. The nontoxic mushroom Auricularia auricula contains a polysaccharide with anticoagulant activity mediated by antithrombin. Thromb Res. 2003;112:151-158. https://doi.org/10.1016/j.thromres.2003.10.022
  6. Yu M, Xu X, Qing Y, et al. Isolation of an anti-tumor polysaccharide from Auricularia polytricha (jew's ear) and its effects on macrophage activation. Eur Food Res Technol. 2009;228:477-485. https://doi.org/10.1007/s00217-008-0955-2
  7. Yu J, Sun R, Zhao Z, et al. Auricularia polytricha polysaccharides induce cell cycle arrest and apoptosis in human lung cancer A549 cells. Int J Biol Macromol. 2014;68:67-71. https://doi.org/10.1016/j.ijbiomac.2014.04.018
  8. Wang X, Wang W. Research progress on polysaccharide from Auricularia polytricha Sacc. J Zhangzhou Norm Univ. 2010;23:103-107.
  9. Shen C, Luo X, Jang N, et al. Research progress on pharmacological activities of Auricularia polytricha polyaccharide. J Anhui Agric Sci. 2011;39:13407-13408.
  10. Stajic M, Milenkovic I, Brceski I, et al. Mycelial growth of edible and medicinal oyster mushroom [Pleurotus ostreatus (Jacq.: Fr.) Kumm.] on selenium-enriched media. Int J Med Mushr. 2002;4:4-8.
  11. Tanaka M, Knowles W, Brown R, et al. Biomagnetic recovery and bioaccumulation of selenium granules in magnetotactic bacteria. Appl Environ Microbiol. 2016;82:3886-3891. https://doi.org/10.1128/AEM.00508-16
  12. Tommerup IC. Temperature relations of spore germination and hyphal growth of vesicular-arbuscular mycorrhizal fungi in soil. Transact Brit Mycolog Soc. 1983;81:381-387. https://doi.org/10.1016/S0007-1536(83)80090-4
  13. Ni X, Guo Q. Optimal pH and optimal temperature for enzyme action of several extracellular enzymes from Agaricus blazei. Zhongguo Shiyongjun. 2001;20:35-37.
  14. Curran M, Lu Y, Taylor J, et al. The temperature response of fungal enzyme kinetics. AGU Fall Meeting Abstracts. 2013; abstract id. B33C-0501.
  15. Wei W, Yu M, Xu X, et al. Effects of temperatures on the substance content and extracellular enzyme activity of culture substrate during Ganoderma lucidum reproductive stage. Zhongguo Shiyongjun. 2014;33:49-55.
  16. Ander P, Eriksson KE. The importance of phenol oxidase activity in lignin degradation by the white-rot fungus Sporotrichum pulverulentum. Arch Microbiol. 1976;109:1-8. https://doi.org/10.1007/BF00425105
  17. Leatham GF. Extracellular enzymes produced by the cultivated mushroom Lentinus edodes during degradation of a lignocellulosic medium. Appl Environ Microbiol. 1985;50:859-867.
  18. DE Vries OMH, Kooistra WHCF, Wessels JGH. Formation of an extracellular laccase by a Schizophyllum commune dikaryon. Microbiology. 1986;132:2817-2826. https://doi.org/10.1099/00221287-132-10-2817
  19. Carbajo JM, Junca H, Terron MC, et al. Tannic acid induces transcription of laccase gene cglcc1 in the white-rot fungus Coriolopsis gallica. Can J Microbiol. 2002;48:1041-1047. https://doi.org/10.1139/w02-107
  20. Cho YS, Kim JS, Crowley DE, et al. Growth promotion of the edible fungus Pleurotus ostreatus by fluorescent pseudomonads. FEMS Microbiol Lett. 2003;218:271-276. https://doi.org/10.1016/S0378-1097(02)01144-8
  21. Liang C, Wu C, Lu P, et al. Biological efficiency and nutritional value of the culinary-medicinal mushroom Auricularia cultivated on a sawdust basal substrate supplement with different proportions of grass plants. Saudi J Biol Sci. 2016. In press. DOI:10.1016/j.sjbs.2016.10.017
  22. Li X, Hou L, Liu M, et al. Primary effects of extracellular enzyme activity and microbial community on carbon and nitrogen mineralization in estuarine and tidal wetlands. Appl Microbiol Biotechnol. 2015;99:2895-2909. https://doi.org/10.1007/s00253-014-6187-4
  23. Patel RK, Jain M. NGS QC toolkit: a platform for quality control of next-generation sequencing data. Encyclop Metagenom. 2015;7:1-5.
  24. Meier R. From Malaise traps to phylogenetic diversity: developing rapid biodiversity assessment techniques based on NGS. In: 2016 International Congress of Entomology. Annapolis: Entomological Society of America; 2016.
  25. Yang Z. Study of optimum meteorological condi- tions for Auricularia polytricha cultivation. Shiyongjun. 1993;15:5-6.
  26. Yu M, Ma B, Luo X, et al. Molecular diversity of Auricularia polytricha revealed by inter-simple sequence repeat and sequence-related amplified polymorphism markers. Curr Microbiol. 2008;56:240-245. https://doi.org/10.1007/s00284-007-9067-7
  27. Cheng L, Cheng Z, Wang C, et al. Experimental research on screening suitable strains of Auricularia polytricha for cultivation by sawdust of mulberry branch. Southern Hortic. 2013;24:15-18.
  28. Wang B, Jia D, Gao J, et al. Study on genetic differences and yields within Auricularia cornea mutants. Southwest China J Agric Sci. 2015;28:2832-2834.
  29. Zhang B, Miao R, Zhou J, et al. Effects of cultivating substrates with different nitrogen sources on agronomic traits, quality and production efficiency of Auricularia cornea. J Southern Agric. 2017;48:2210-2217.
  30. Du P, Cui B, Dai Y. High genetic diversity in wild culinary-medicinal wood ear mushroom, Auricularia polytricha (Mont.) Sacc., in tropical China revealed by ISSR analysis. Int J Med Mushr. 2011;13:289-297. https://doi.org/10.1615/IntJMedMushr.v13.i3.90
  31. Liu J, Zhang J, Ma Q, et al. Research on black fungus secondary mycelium forms on different conditions of temperature and light. Heilongjiang Sci. 2014;5:13-15.
  32. Zervakis G, Philippoussis A, Ioannidou S, et al. Mycelium growth kinetics and optimal temperature conditions for the cultivation of edible mushroom species on lignocellulosic substrates. Folia Microbiol (Praha). 2001;46:231-234. https://doi.org/10.1007/BF02818539
  33. Ma H. Research on partial enzymological property of crude cellulase and xylanase from three kinds of edible fungus residues. J Anhui Agric Sci. 2010;38:15479-15480.
  34. Zhu Q, Gao F, Yu X, et al. Study on femention condition of laccase from Auricularia polytricha(Mont.)Sacc. Resour Dev Market. 2012;28:679-680.
  35. Langenheder S, Szekely AJ. Species sorting and neutral processes are both important during the initial assembly of bacterial communities. Isme J. 2011;5:1086-1094. https://doi.org/10.1038/ismej.2010.207
  36. Mago T, Salzberg SL. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics. 2011;27:2957-2963. https://doi.org/10.1093/bioinformatics/btr507
  37. Caporaso JG, Kuczynski J, Stombaugh J, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7:335-336. https://doi.org/10.1038/nmeth.f.303
  38. Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010;26:2460-2461. https://doi.org/10.1093/bioinformatics/btq461
  39. Bokulich NA, Mills DA. Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities. Appl Environ Microbiol. 2013;79:2519-2526. https://doi.org/10.1128/AEM.03870-12
  40. Desantis TZ, Hugenholtz P, Larsen N, et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol. 2006;72:5069-5072. https://doi.org/10.1128/AEM.03006-05
  41. Galili T, O'Callaghan A, Sidi J, et al. Heatmaply: an R package for creating interactive cluster heatmaps for online publishing. Bioinformatics. 2018;34:1600-1602. https://doi.org/10.1093/bioinformatics/btx657
  42. Segata N, Izard J, Waldron L, et al. Metagenomic biomarker discovery and explanation. Genome Biol. 2011;12:R60-R78. https://doi.org/10.1186/gb-2011-12-6-r60
  43. Shannon P, Markiel A, Ozier O, et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003;13:2498-2504. https://doi.org/10.1101/gr.1239303
  44. Langille MGI, Zaneveld J, Caporaso JG, et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotechnol. 2013;31:814-821. https://doi.org/10.1038/nbt.2676
  45. Hoa HT, Wang C. The effects of temperature and nutritional conditions on mycelium growth of two oyster mushrooms (Pleurotus ostreatus and Pleurotus cystidiosus). Mycobiology. 2015;43:14-23. https://doi.org/10.5941/MYCO.2015.43.1.14
  46. Guo Y, Ye X, Gan B, et al. Study on three kinds of edible fungi hyphae colony and hyphae form in different temperature and light training conditions. Southwest China J Agric Sci. 2011;24:2301-2306.
  47. Song C, Chen Q, Wu X, et al. Heat stress induces apoptotic-like cell death in two Pleurotus species. Curr Microbiol. 2014;69:611-616. https://doi.org/10.1007/s00284-014-0634-4
  48. Abrashev R, Stoitsova S, Krumova E, et al. Temperature-stress tolerance of the fungal strain Aspergillus niger 26: physiological and ultrastructural changes. World J Microbiol Biotechnol. 2014;30:1661-1668. https://doi.org/10.1007/s11274-013-1586-8
  49. Devi MN. Comparative study for production of extracellular ligninolytic enzymes from commercially cultivated Auricularia polytricha and wild type mushrooms. Shoolini University of Biotechnology and Management Sciences; 2015. Available from: http://hdl.handle.net/10603/43048.
  50. Abrahao MC, Gugliotta AM, Silva R, et al. Ligninolytic activity from newly isolated basidiomycete strains and effect of these enzymes on the azo dye orange II decolourisation. Ann Microbiol. 2008;58:427-432. https://doi.org/10.1007/BF03175538
  51. Wang M, Yong L, Shizhong L, et al. Screening and enzyme-producing conditions of edible fungus strains with higher lignin degradation ability. Guizhou Agric Sci. 2013;41:83-86.
  52. Dong X, Yuan H, Gao T. Progress in studies of ligninolytic enzymes and genes. Biotechnol Bull. 2014;11:62-72.
  53. Lv C, Sun T, Zhang J, et al. Study on the measurement methods of several kinds of common edible fungi extracellular enzyme activity. Forest By-Prod Spec China. 2013;5:93-96.
  54. Wang Q, Hong LU, Wang L. Culture conditions optimization for Auricularia polytrichain vitex chips. Northern Hortic. 2017;12:146-150.
  55. Wang H, Li Z. Three important enzymes for lignin degradation. J Biol. 2003;20:9-11.
  56. Reddy CA. An overview of the recent advances on the physiology and molecular biology of lignin peroxidases of Phanerochaete chrysosporium. J Biotechnol. 1993;30:91-107. https://doi.org/10.1016/0168-1656(93)90030-Q
  57. Saha A, Pipariya A, Bhaduri D. Enzymatic activities and microbial biomass in peanut field soil as affected by the foliar application of tebuconazole. Environ Earth Sci. 2016;75:558-571. https://doi.org/10.1007/s12665-015-5116-x
  58. Chen S, Cheng H, Wyckoff KN, et al. Linkages of Firmicutes and Bacteroidetes populations to methanogenic process performance. J Ind Microbiol Biotechnol. 2016;43:771-781. https://doi.org/10.1007/s10295-016-1760-8
  59. Kampmann K, Ratering S, Kramer I, et al. Unexpected stability of Bacteroidetes and Firmicutes communities in laboratory biogas reactors fed with different defined substrates. Appl Environ Microbiol. 2012;78:2106-2119. https://doi.org/10.1128/AEM.06394-11
  60. Mcgee CF, Byrne H, Irvine A, et al. Diversity and dynamics of the DNA and cDNA-derived bacterial compost communities throughout the Agaricus bisporus mushroom cropping process. Ann Microbiol. 2017;67:751-761. https://doi.org/10.1007/s13213-017-1303-1
  61. Song Z-Q, Wang F-P, Zhi X-Y, et al. Diversities of Firmicutes in four hot springs in Yunnan and Tibet. Environ Microbiol. 2013;15:1160-1486. https://doi.org/10.1111/1462-2920.12025
  62. Ming C, Ying Y, Lin F, et al. Microbial community structure of casing soil during mushroom growth. Pedosphere. 2009;19:446-452. https://doi.org/10.1016/S1002-0160(09)60137-5
  63. Gigliotti G, Pezzolla D, Zadra C, et al. Dynamics of organic matter and microbial populations in amended soil: a multidisciplinary approach. Soil Biol Biochem. 2015;82:9-20. https://doi.org/10.1016/j.soilbio.2014.12.008
  64. Vajna B, Nagy A, Sajben E, et al. Microbial community structure changes during oyster mushroom substrate preparation. Appl Microbiol Biotechnol. 2010;86:367-375. https://doi.org/10.1007/s00253-009-2371-3
  65. Durrer A, Gumiere T, Taketani RG, et al. The drivers underlying biogeographical patterns of bacterial communities in soils under sugarcane cultivation. Appl Soil Ecol. 2017;110:12-20. https://doi.org/10.1016/j.apsoil.2016.11.005
  66. Harrison RJ. Understanding genetic variation and function- the applications of next generation sequencing. Semin Cell Dev Biol. 2012;23:230-236. https://doi.org/10.1016/j.semcdb.2012.01.006
  67. Li C, Ma W, Yin S, et al. Sorting nexin 11 regulates lysosomal degradation of plasma membrane TRPV3. Traffic. 2016;17:500-514. https://doi.org/10.1111/tra.12379