DOI QR코드

DOI QR Code

The Complete Mitochondrial Genome of Nysius plebeius Distant, 1883 (Heteroptera: Lygaeidae) from Korea

한국에 서식하는 애긴노린재(노린재목: 긴노린재과)의 미토콘드리아 전장 유전체

  • Jiyeong Shin (Agriculture and Life Science Research Institute, Kangwon National University) ;
  • Rameswor Maharjan (Department of Southern Area Crop Science, National Institute of Crop Science, Rural Development Administration) ;
  • Hwijong Yi (Department of Southern Area Crop Science, National Institute of Crop Science, Rural Development Administration) ;
  • Minkyu Jeong (Department of plant medicine, Division of Bio-resource Sciences, CALS, Kangwon National University) ;
  • Juil Kim (Agriculture and Life Science Research Institute, Kangwon National University)
  • Received : 2023.02.16
  • Accepted : 2023.05.24
  • Published : 2023.06.01

Abstract

Nysius plebeius is a major lygaeid pest of various cereal crops and ornamental plants in East Asian countries, including Korea. The complete mitochondrial genome of N. plebeius was characterized and found to comprise a total of 17,367 bp, which included 13 protein-coding genes, NADH dehydrogenase components (complex I, ND), cytochrome oxidase subunits (complex VI, COX), cytochrome oxidase b (CYPB), two ATP synthases, two ribosomal RNA genes, and 22 transfer RNAs. The GC content of 23%. It showed high sequence similarity to other Lygaeidae species, such as N. cymoides (94.5%), N. fuscovittatus (91.7%), and an unknown Nysius species (94.1%). This new N. plebeius mitochondrial genome can be widely used for evolutionary studies of Lygaeidae and to improve pest management practices.

애긴노린재는 긴노린재과에 속하며 한국을 포함한 동아시아 국가의 다양한 곡물 및 관상용 식물의 주요 해충으로 여겨진다. 본 연구에서는 애긴노린재의 17,367 bp 미토콘드리아 유전체에서 13개의 protein-coding genes, 22개의 transfer RNA genes, 2개의 ribosomal RNA genes과 non-coding A+T rich region를 확인하였다. G+C content는 23%로 나타났고 다른 긴노린재과와의 염기서열 유사성이 N. cymoides (94.5%), N. fuscovittatus (91.7%)으로 높은 것을 발견하였다. 애긴노린재의 미토콘드리아 유전체 정보는 향후 긴노린재과의 진화 연구와 해충 방제를 위한 정보로 널리 사용될 수 있다.

Keywords

Acknowledgement

This research was funded by the Cooperative Research Program and supported by Agriculture Science & Technology Development (Project No. PJ01561902), Rural Development Administration, and Basic Science Research Program through the National Research Foundation of Korea (NRF), funded by the Ministry of Education (NRF-2021R1A6A1A03044242).

References

  1. Cao, Y., Wu, H.-T., Li, M., Chen, W.-T., Yuan, M.-L., 2020. The complete mitochondrial genome of Nysius fuscovittatus (Hemiptera: Lygaeidae). Mitochondrial DNA Part B 5, 3483-3484. https://doi.org/10.1080/23802359.2020.1827062
  2. Carapelli, A., Brunetti, C., Cucini, C., Cardaioli, E., Soltani, A., Amri, M., Mediouni Ben Jemaa, J., Fanciulli, P.P., Nardi, F., 2021. The mitogenome of the true bug Nysius cymoides (Insecta, Heteroptera) and the phylogeny of Lygaeoidea. Mitochondrial DNA Part B 6, 2366-2368. https://doi.org/10.1080/23802359.2021.1951139
  3. Hua, J., Li, M., Dong, P., Cui, Y., Xie, Q., Bu, W., 2008. Comparative and phylogenomic studies on the mitochondrial genomes of Pentatomomorpha (Insecta: Hemiptera: Heteroptera). BMC Genomics 9, 1-15. https://doi.org/10.1186/1471-2164-9-610
  4. Huang, W., Gong, S., Wu, Y., Song, F., Li, H., 2021. The complete mitochondrial genome of Tropidothorax sinensis (Reuter, 1888) (Hemiptera: Lygaeidae). Mitochondrial DNA Part B 6, 1808-1809. https://doi.org/10.1080/23802359.2021.1934156
  5. Kim, J., Kim, T., Kang, D., Shin, W., Lee, Y., 1994. Investigation of pentatomid species of chrysanthemum as host plants of Nysius plebejus distant (Hemiptera: Lygaeidae) and its control. Korean J. Appl. Entomol. 33, 1-5.
  6. Kim, J., Nam, H.Y., Kwon, M., Kim, H.J., Yi, H.J., Haenniger, S., Unbehend, M., Heckel, D.G., 2021. Development of a simple and accurate molecular tool for Spodoptera frugiperda species identification using LAMP. Pest Manage. Sci. 77, 3145-3153. https://doi.org/10.1002/ps.6350
  7. Kolokotronis, S.-O., Foox, J., Rosenfeld, J.A., Brugler, M.R., Reeves, D., Benoit, J.B., Booth, W., Robison, G., Steffen, M., Sakas, Z., 2016. The mitogenome of the bed bug Cimex lectularius (Hemiptera: Cimicidae). Mitochondrial DNA Part B 1, 425-427. https://doi.org/10.1080/23802359.2016.1180268
  8. KOSIS. 2022. Korean Statistical Information Service. https://kostat.go.kr/ (accessed on 10 February, 2023)
  9. Lee, B., Lee, S., Kim, Y., 1998. References review for the scientific researches on perilla. RDA J. Ind. Crop. Sci. 40, 80-112.
  10. Liu, Y., Li, H., Song, F., Zhao, Y., Wilson, J.J., Cai, W., 2019. Higher-level phylogeny and evolutionary history of Pentatomomorpha (Hemiptera: Heteroptera) inferred from mitochondrial genome sequences. Syst. Entomol. 44, 810-819. https://doi.org/10.1111/syen.12357
  11. Maharjan, R., Yoon, Y., Jang, Y., Jeong, M., Jung, T.W., Ha, T.J., Park, J.E., Cho, H.S., Yi, H., 2020. Oviposition and development response of perilla seed bugs (Nysius sp.)(Heteroptera: Lygaeidae) to five crop seeds. J. Appl. Entomol. 144, 806-816. https://doi.org/10.1111/jen.12814
  12. Maharjan, R., Yoon, Y., Jang, Y., Kim, J., Yeun Nam, H., Jeong, M., Park, K., Yi, H., 2022. Species composition, abundance, and seasonal dynamics of perilla seed bugs (Heteroptera: Lygaeidae) in weeds and perilla fields in Korea. Environ. Entomol. 51, 263-277. https://doi.org/10.1093/ee/nvab114
  13. Nakatani, Y., 2015. Revision of the lygaeid genus Nysius (Heteroptera: Lygaeidae: Orsillinae) of Japan, with description of a new species. Entomol. Sci. 18, 435-441. https://doi.org/10.1111/ens.12141
  14. Schwartz, S., Kent, W.J., Smit, A., Zhang, Z., Baertsch, R., Hardison, R.C., Haussler, D., Miller, W., 2003. Human-mouse alignments with BLASTZ. Genome Res. 13, 103-107. https://doi.org/10.1101/gr.809403
  15. Tamura, K., Stecher, G., Kumar, S., 2021. MEGA11: molecular evolutionary genetics analysis version 11. Mol. Biol. Evol. 38, 3022-3027. https://doi.org/10.1093/molbev/msab120
  16. Tillich, M., Lehwark, P., Pellizzer, T., Ulbricht-Jones, E.S., Fischer, A., Bock, R., Greiner, S., 2017. GeSeq-versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45, W6-W11. https://doi.org/10.1093/nar/gkx391
  17. Ye, F., Kment, P., Redei, D., Luo, J.Y., Wang, Y.H., Kuechler, S.M., Zhang, W.W., Chen, P.P., Wu, H.Y., Wu, Y.Z., 2022. Diversification of the phytophagous lineages of true bugs (Insecta: Hemiptera: Heteroptera) shortly after that of the flowering plants. Cladistics 38, 403-428. https://doi.org/10.1111/cla.12501
  18. Zhang, Q.-L., Feng, R.-Q., Li, M., Guo, Z.-L., Zhang, L.-J., Luo, F.-Z., Cao, Y., Yuan, M.-L., 2019. The complete mitogenome of Pyrrhocoris tibialis (Hemiptera: Pyrrhocoridae) and phylogenetic implications. Genes 10, 820.