Acknowledgement
We are grateful to all the laboratory members for their technical advice and helpful discussions.
References
- MacLaughlin DT, Donahoe PK. Sex determination and differentiation. N Engl J Med 2004;350:367-78. https://doi.org/10.1056/NEJMra022784
- Nagahama Y, Chakraborty T, Paul-Prasanth B, et al. Sex determination, gonadal sex differentiation, and plasticity in vertebrate species. Physiol Rev 2021;101:1237-308. https://doi.org/10.1152/physrev.00044.2019
- Tevosian SG, Albrecht KH, Crispino JD, Fujiwara Y, Eicher EM, Orkin SH. Gonadal differentiation, sex determination and normal Sry expression in mice require direct interaction between transcription partners GATA4 and FOG2. Development 2002;129:4627-34. https://doi.org/10.1242/dev.129.19.4627
- Sreenivasan R, Gonen N, Sinclair A. SOX genes and their role in disorders of sex development. Sex Dev 2022;16:80-91. https://doi.org/10.1159/000524453
- Capel B, Swain A, Nicolis S, et al. Circular transcripts of the testis-determining gene Sry in adult mouse testis. Cell 1993;73:1019-30. https://doi.org./10.1016/0092-8674(93)90279-y
- Ioannidis J, Taylor G, Zhao D, et al. Primary sex determination in birds depends on DMRT1 dosage, but gonadal sex does not determine adult secondary sex characteristics. Proc Natl Acad Sci USA 2021;118:e2020909118. https://doi.org/10.1073/pnas.2020909118
- Sun C, Jin K, Zhou J, et al. Role and function of the Hintw in early sex differentiation in chicken (Gallus gallus) embryo. Anim Biotechnol 2023;34:56-66. https://doi.org/10.1080/10495398.2021.1935981
- Luo X, Guo J, Zhang J, Ma Z, Li H. Overview of chicken embryo genes related to sex differentiation. PeerJ 2024;12:e17072. https://doi.org/10.7717/peerj.17072
- Zhao D, McBride D, Nandi S, et al. Somatic sex identity is cell autonomous in the chicken. Nature 2010;464:237-42. https://doi.org/10.1038/nature08852
- Chue J, Smith CA. Sex determination and sexual differentiation in the avian model. FEBS J 2011;278:1027-34. https://doi.org/10.1111/j.1742-4658.2011.08032.x
- Hirst CE, Major AT, Smith CA. Sex determination and gonadal sex differentiation in the chicken model. Int J Dev Biol 2018;62:153-66. https://doi.org/10.1387/ijdb.170319cs
- Jiang J, Zhang C, Yuan X, et al. Spin1z induces the male pathway in the chicken by down-regulating Tcf4. Gene 2021;780:145521. https://doi.org/10.1016/j.gene.2021.145521
- Lambeth LS, Raymond CS, Roeszler KN, et al. Over-expression of DMRT1 induces the male pathway in embryonic chicken gonads. Dev Biol 2014;389:160-72. https://doi.org/10.1016/j.ydbio.2014.02.012
- Zhang Y, Yang H, Zhang Z, et al. Isolation of chicken embryonic stem cell and preparation of chicken chimeric model. Mol Biol Rep 2013;40:2149-56. https://doi.org/10.1007/s11033-012-2274-8
- Yuan X, Zhang C, Zhao R, et al. Glycolysis combined with core pluripotency factors to promote the formation of chicken induced pluripotent stem cells. Animals 2021;11:425. https://doi.org/10.3390/ani11020425
- Ren W, Zheng D, Liu G, et al. The effect of inhibiting the wingless/integrated (WNT) signaling pathway on the early embryonic disc cell culture in chickens. Animals 2024;14:1382. https://doi.org/10.3390/ani14091382
- Farzaneh M, Zare M, Hassani SN, Baharvand H. Effects of various culture conditions on pluripotent stem cell derivation from chick embryos. J Cell Biochem 2018;119:6325-36. https://doi.org/10.1002/jcb.26761
- Ding Y, Zhao J, Xu X, et al. Inhibition of autophagy maintains ESC pluripotency and inhibits primordial germ cell formation in chickens. Stem Cells Int 2023;2023:4956871. https://doi.org/10.1155/2023/4956871
- Jin K, Zhou J, Zuo Q, et al. Transcriptome sequencing and comparative analysis of amphoteric ESCs and PGCs in chicken (Gallus gallus). Animals 2020;10:2228. https://doi.org/10.3390/ani10122228
- Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 2014;30:2114-20. https://doi.org/10.1093/bioinformatics/btu170
- Wang L, Wang S, Li W. RSeQC: quality control of RNA-seq experiments. Bioinformatics 2012;28:2184-5. https://doi.org/10.1093/bioinformatics/bts356
- Wang L, Nie J, Sicotte H, et al. Measure transcript integrity using RNA-seq data. BMC Bioinformatics 2016;17:58. https://doi.org/10.1186/s12859-016-0922-z
- Brown J, Pirrung M, McCue LA. FQC dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool. Bioinformatics 2017;33:3137-9. https://doi.org/10.1093/bioinformatics/btx373
- Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements. Nat Methods 2015;12:357-60. https://doi.org/10.1038/nmeth.3317
- Kim D, Paggi JM, Park C, Bennett C, Salzberg SL. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol 2019;37:907-15. https://doi.org/10.1038/s41587-019-0201-4
- Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method. Methods 2001;25:402-8. https://doi.org/10.1006/meth.2001.1262
- Schmittgen TD, Livak KJ. Analyzing real-time PCR data by the comparative CT method. Nat Protoc 2008;3:1101-8. https://doi.org/10.1038/nprot.2008.73
- Sun S, Li H, Chen J, Qian Q. Lactic acid: no longer an inert and end-product of glycolysis. Physiology 2017;32:453-63. https://doi.org/10.1152/physiol.00016.2017
- Greenfield EA. Hybridoma screening by antibody capture: dot blot. Cold Spring Harb Protoc 2021;2021. https://doi.org/10.1101/pdb.prot103051
- Rigoulet M, Bouchez CL, Paumard P, et al. Cell energy metabolism: an update. Biochim Biophys Acta Bioenerg 2020;1861:148276. https://doi.org/10.1016/j.bbabio.2020.148276
- Kishore M, Cheung KCP, Fu H, et al. Regulatory T cell migration is dependent on glucokinase-mediated glycolysis. Immunity 2017;47:875-89. https://doi.org/10.1016/j.immuni.2017.10.017
- Wu J, Ocampo A, Belmonte JCI. Cellular metabolism and induced pluripotency. Cell 2016;166:1371-85. https://doi.org/10.1016/j.cell.2016.08.008
- Hayashi Y, Otsuka K, Ebina M, et al. Distinct requirements for energy metabolism in mouse primordial germ cells and their reprogramming to embryonic germ cells. Proc Natl Acad Sci USA 2017;114:8289-94. https://doi.org/10.1073/pnas.1620915114
- Zhang J, Nuebel E, Daley GQ, Koehler CM, Teitell MA. Metabolic regulation in pluripotent stem cells during reprogramming and self-renewal. Cell Stem Cell 2012;11:589-95. https://doi.org/10.1016/j.stem.2012.10.005
- Andrews GK, Teng CS. Studies on sex-organ development. Prenatal effect of oestrogenic hormone on tubular-gland cell morphogenesis and ovalbumin-gene expression in the chick Müllerian duct. Biochem J 1979;182:271-86. https://doi.org/10.1042/bj1820271
- Hincke MT, Da Silva M, Guyot N, et al. Dynamics of structural barriers and innate immune components during incubation of the avian egg: critical interplay between autonomous embryonic development and maternal anticipation. J Innate Immun 2019;11:111-24. https://doi.org/10.1159/000493719
- Guioli S, Nandi S, Zhao D, Burgess-Shannon J, Lovell-Badge R, Clinton M. Gonadal asymmetry and sex determination in birds. Sex Dev 2014;8:227-42. https://doi.org/10.1159/000358406
- Johnson Pokorná M, Kratochvíl L. What was the ancestral sex-determining mechanism in amniote vertebrates? Biol Rev 2016;91:1-12. https://doi.org/10.1111/brv.12156
- Tachibana M. Epigenetics of sex determination in mammals. Reprod Med Biol 2015;15:59-67. https://doi.org/10.1007/s12522-015-0223-7
- Baroiller JF, D'Cotta H, Saillant E. Environmental effects on fish sex determination and differentiation. Sex Dev 2009;3:118-35. https://doi.org/10.1159/000223077
- Koopman P. The genetics and biology of vertebrate sex determination. Cell 2001;105:843-7. https://doi.org/10.1016/s0092-8674(01)00408-1
- Ottolenghi C, Pelosi E, Tran J, et al. Loss of Wnt4 and Foxl2 leads to female-to-male sex reversal extending to germ cells. Hum Mol Genet 2007;16:2795-804. https://doi.org/10.1093/hmg/ddm235
- Boulanger L, Pannetier M, Gall L, et al. FOXL2 is a female sex-determining gene in the goat. Curr Biol 2014;24:404-8. https://doi.org/10.1016/j.cub.2013.12.039
- Lambeth LS, Morris K, Ayers KL, et al. Overexpression of anti-Müllerian hormone disrupts gonadal sex differentiation, blocks sex hormone synthesis, and supports cell autonomous sex development in the chicken. Endocrinology 2016;157:1258-75. https://doi.org/10.1210/en.2015-1571
- Akashi H, Hasui D, Ueda K, Ishikawa M, Takeda M, Miyagawa S. Understanding the role of environmental temperature on sex determination through comparative studies in reptiles and amphibians. J Exp Zool A Ecol Integr Physiol 2024;341:48-59. https://doi.org/10.1002/jez.2760
- Hayasaka O, Takeuchi Y, Shiozaki K, Anraku K, Kotani T. Green light irradiation during sex differentiation induces female-to-male sex reversal in the medaka Oryzias latipes. Sci Rep 2019;9:2383. https://doi.org/10.1038/s41598-019-38908-w
- Piferrer F. Epigenetics of sex determination and gonadogenesis. Dev Dyn 2013;242:360-70. https://doi.org/10.1002/dvdy.23924
- Kuroki S, Tachibana M. Epigenetic regulation of mammalian sex determination. Mol Cell Endocrinol 2018;468:31-8. https://doi.org/10.1016/j.mce.2017.12.006
- Renn SCP, Hurd PL. Epigenetic regulation and environmental sex determination in cichlid fishes. Sex Dev 2021;15:93-107. https://doi.org/10.1159/000517197
- Wang FL, Yan LX, Shi HJ, et al. Genome-wide identification, evolution of DNA methyltransferases and their expression during gonadal development in Nile tilapia. Comp Biochem Physiol B Biochem Mol Biol 2018;226:73-84. https://doi.org/10.1016/j.cbpb.2018.08.007
- Piferrer F, Anastasiadi D. Do the offspring of sex reversals have higher sensitivity to environmental perturbations? Sex Dev 2021;15:134-47. https://doi.org/10.1159/000515192
- Jeong YH, Lu H, Park CH, et al. Stochastic anomaly of methylome but persistent SRY hypermethylation in disorder of sex development in canine somatic cell nuclear transfer. Sci Rep 2016;6:31088. https://doi.org/10.1038/srep31088
- Carré GA, Siggers P, Xipolita M, et al. Loss of p300 and CBP disrupts histone acetylation at the mouse Sry promoter and causes XY gonadal sex reversal. Hum Mol Genet 2018;27:190-8. https://doi.org/10.1093/hmg/ddx398
- Legoff L, Dali O, De La Mata Santaella E, Jaulin C, D'Cruz SC, Smagulova F. Histone deacetylase inhibition leads to regulatory histone mark alterations and impairs meiosis in oocytes. Epigenetics Chromatin 2021;14:39. https://doi.org/10.1186/s13072-021-00413-8
- Li J, Zhang X, Wang X, et al. The m6A methylation regulates gonadal sex differentiation in chicken embryo. J Anim Sci Biotechnol 2022;13:52. https://doi.org/10.1186/s40104-022-00710-6
- Shioda K, Odajima J, Kobayashi M, et al. Transcriptomic and epigenetic preservation of genetic sex identity in estrogen-feminized male chicken embryonic gonads. Endocrinology 2021;162:bqaa208. https://doi.org/10.1210/endocr/bqaa208
- Matsumoto Y, Hannigan B, Crews D. Temperature shift alters DNA methylation and histone modification patterns in gonadal aromatase (cyp19a1) gene in species with temperature-dependent sex determination. PLOS ONE 2016;11:e0167362. https://doi.org/10.1371/journal.pone.0167362
- Torner E, Bussalleu E, Briz MD, Yeste M, Bonet S. Energy substrate influences the effect of the timing of the first embryonic cleavage on the development of in vitro-produced porcine embryos in a sex-related manner. Mol Reprod Dev 2013;80:924-35. https://doi.org/10.1002/mrd.22229
- Zhang Q, Ren J, Wang F, et al. Mitochondrial and glucose metabolic dysfunctions in granulosa cells induce impaired oocytes of polycystic ovary syndrome through Sirtuin 3. Free Radic Biol Med 2022;187:1-16. https://doi.org/10.1016/j.freeradbiomed.2022.05.010
- Helsel AR, Oatley MJ, Oatley JM. Glycolysis-optimized conditions enhance maintenance of regenerative integrity in mouse spermatogonial stem cells during long-term culture. Stem Cell Reports 2017;8:1430-41. https://doi.org/10.1016/j.stemcr.2017.03.004
- Boruszewska D, Kowalczyk-Zieba I, Suwik K, et al. Prostaglandin E2 affects in vitro maturation of bovine oocytes. Reprod Biol Endocrinol 2020;18:40. https://doi.org/10.1186/s12958-020-00598-9
- Geer BW, Martensen DV, Downing BC, Muzyka GS. Metabolic changes during spermatogenesis and thoracic tissue maturation in Drosophila hydei. Dev Biol 1972;28:390-406. https://doi.org/10.1016/0012-1606(72)90022-X
- Degli Esposti D, Almunia C, Guery MA, et al. Co-expression network analysis identifies gonad- and embryo-associated protein modules in the sentinel species Gammarus fossarum. Sci Rep 2019;9:7862. https://doi.org/10.1038/s41598-019-44203-5
- Liu F, Jin S, Li N, Liu X, Wang H, Li J. Comparative and functional analysis of testis-specific genes. Biol Pharm Bull 2011;34:28-35. https://doi.org/10.1248/bpb.34.28
- Zhao Z, Zhao Z, Cheng F, et al. Analysis of the molecular mechanism of energy metabolism in the sex differentiation of chickens based on transcriptome sequencing. Genes 2024;15:1035. https://doi.org/10.3390/genes15081035
- Hayashi Y, Mori M, Igarashi K, et al. Proteomic and metabolomic analyses uncover sex-specific regulatory pathways in mouse fetal germline differentiation. Biol Reprod 2020;103:717-35. https://doi.org/10.1093/biolre/ioaa115
- Shen Y, Wei W, Zhou DX. Histone acetylation enzymes coordinate metabolism and gene expression. Trends Plant Sci 2015;20:614-21. https://doi.org/10.1016/j.tplants.2015.07.005
- Jain R, Epstein JA. Epigenetics. In: Rickert-Sperling S, Kelly RG, Haas N, editors. Congenital heart diseases: the broken heart. Springer; 2024. pp. 341-64. https://doi.org/10.1007/978-3-031-44087-8_18