• Title/Summary/Keyword: Accuracies

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Comparison of genomic predictions for carcass and reproduction traits in Berkshire, Duroc and Yorkshire populations in Korea

  • Iqbal, Asif;Choi, Tae-Jeong;Kim, You-Sam;Lee, Yun-Mi;Alam, M. Zahangir;Jung, Jong-Hyun;Choe, Ho-Sung;Kim, Jong-Joo
    • Asian-Australasian Journal of Animal Sciences
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    • v.32 no.11
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    • pp.1657-1663
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    • 2019
  • Objective: A genome-based best linear unbiased prediction (GBLUP) method was applied to evaluate accuracies of genomic estimated breeding value (GEBV) of carcass and reproductive traits in Berkshire, Duroc and Yorkshire populations in Korean swine breeding farms. Methods: The data comprised a total of 1,870, 696, and 1,723 genotyped pigs belonging to Berkshire, Duroc and Yorkshire breeds, respectively. Reference populations for carcass traits consisted of 888 Berkshire, 466 Duroc, and 1,208 Yorkshire pigs, and those for reproductive traits comprised 210, 154, and 890 dams for the respective breeds. The carcass traits analyzed were backfat thickness (BFT) and carcass weight (CWT), and the reproductive traits were total number born (TNB) and number born alive (NBA). For each trait, GEBV accuracies were evaluated with a GEBV BLUP model and realized GEBVs. Results: The accuracies under the GBLUP model for BFT and CWT ranged from 0.33-0.72 and 0.33-0.63, respectively. For NBA and TNB, the model accuracies ranged 0.32 to 0.54 and 0.39 to 0.56, respectively. The realized accuracy estimates for BFT and CWT ranged 0.30 to 0.46 and 0.09 to 0.27, respectively, and 0.50 to 0.70 and 0.70 to 0.87 for NBA and TNB, respectively. For the carcass traits, the GEBV accuracies under the GBLUP model were higher than the realized GEBV accuracies across the breed populations, while for reproductive traits the realized accuracies were higher than the model based GEBV accuracies. Conclusion: The genomic prediction accuracy increased with reference population size and heritability of the trait. The GEBV accuracies were also influenced by GEBV estimation method, such that careful selection of animals based on the estimated GEBVs is needed. GEBV accuracy will increase with a larger sized reference population, which would be more beneficial for traits with low heritability such as reproductive traits.

Dimensional Accuracies of Cold-Forged Spur Gears (냉간단조 스퍼어기어의 치수정밀도)

  • 이정환;이영선;박종진
    • Transactions of Materials Processing
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    • v.5 no.2
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    • pp.115-121
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    • 1996
  • Recently it is attempted to manufacture gears by various cold forging methods to meet requirements of mass production and uniform qualities. Compared to machined gears cold forged ears reveal higher tooth strength and better surface roughness but they reveal lower geometrical accuracies. Therefore in the present study a series of experiments are performed to investigate relations between geometrical accuracies of dies and billet and those of the final product. The geometrical accuracies of forged gears are considered through functional gear-element tolerances by measuring pitch error profile error lead error radial error tooth thickness and rolling test. Results of the experiments can be summarized as follows: (1) involute spur gears of KS 5(or AGMA7) accuracies can be made,(2) concentricity of die set should be maintained within 0.01mm (3) clearance between the billet and die set should be less than 0.1mm (4) con-centricity and radial runout should be less than 0.08mm and 0.1mm respectively. However it is thought that FEM analysis of elastic/thermal deformations of dies and the billet is necessary for a better understanding of the findings obtained through the present study.

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Analysis of Classification Accuracy for Multiclass Problems (다중 클래스 분포 문제에 대한 분류 정확도 분석)

  • 최의선;이철희
    • Proceedings of the IEEK Conference
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    • 2000.06d
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    • pp.190-193
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    • 2000
  • In this paper, we investigate the distribution of classification accuracies of multiclass problems in the feature space and analyze performances of the conventional feature extraction algorithms. In order to find the distribution of classification accuracies, we sample the feature space and compute the classification accuracy corresponding to each sampling point. Experimental results showed that there exist much better feature sets that the conventional feature extraction algorithms fail to find. In addition, the distribution of classification accuracies is useful for developing and evaluating the feature extraction algorithm.

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High Accuracy Classification Methods for Multi-Temporal Images

  • Hong, Sun Pyo;Jeon, Dong Keun
    • The Journal of the Acoustical Society of Korea
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    • v.16 no.1E
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    • pp.3-8
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    • 1997
  • Three new classification methods for multi temporal images are proposed. They are named as a likelihood addition method, a likelihood majority method and a Dempster-Shafer's rule method. Basic strategies using these methods are to calculate likelihoods for each temporal data and to combine obtained likelihoods for final classification. These three methods use different combining algorithms. From classification experiments, following results were obtained. The method based on Dempster-Shafer's rule of combination showed about 12% improvement of classification accuracies compared to a conventional method. This method needed about 16% more processing times than that of a conventional method. The other two proposed method showed 1% to 5% increase of classification accuracies. However processing times of these two proposed method showed 1% to 5% increase of classification accuracies. However processing times of these two methods are almost the same with that of a conventional method. Among the newly proposed three methods, the Dempster-Shafer's rule method showed the highest classification accuracies with more processing time than those of other methods.

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Assessment of genomic prediction accuracy using different selection and evaluation approaches in a simulated Korean beef cattle population

  • Nwogwugwu, Chiemela Peter;Kim, Yeongkuk;Choi, Hyunji;Lee, Jun Heon;Lee, Seung-Hwan
    • Asian-Australasian Journal of Animal Sciences
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    • v.33 no.12
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    • pp.1912-1921
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    • 2020
  • Objective: This study assessed genomic prediction accuracies based on different selection methods, evaluation procedures, training population (TP) sizes, heritability (h2) levels, marker densities and pedigree error (PE) rates in a simulated Korean beef cattle population. Methods: A simulation was performed using two different selection methods, phenotypic and estimated breeding value (EBV), with an h2 of 0.1, 0.3, or 0.5 and marker densities of 10, 50, or 777K. A total of 275 males and 2,475 females were randomly selected from the last generation to simulate ten recent generations. The simulation of the PE dataset was modified using only the EBV method of selection with a marker density of 50K and a heritability of 0.3. The proportions of errors substituted were 10%, 20%, 30%, and 40%, respectively. Genetic evaluations were performed using genomic best linear unbiased prediction (GBLUP) and single-step GBLUP (ssGBLUP) with different weighted values. The accuracies of the predictions were determined. Results: Compared with phenotypic selection, the results revealed that the prediction accuracies obtained using GBLUP and ssGBLUP increased across heritability levels and TP sizes during EBV selection. However, an increase in the marker density did not yield higher accuracy in either method except when the h2 was 0.3 under the EBV selection method. Based on EBV selection with a heritability of 0.1 and a marker density of 10K, GBLUP and ssGBLUP_0.95 prediction accuracy was higher than that obtained by phenotypic selection. The prediction accuracies from ssGBLUP_0.95 outperformed those from the GBLUP method across all scenarios. When errors were introduced into the pedigree dataset, the prediction accuracies were only minimally influenced across all scenarios. Conclusion: Our study suggests that the use of ssGBLUP_0.95, EBV selection, and low marker density could help improve genetic gains in beef cattle.

Estimation of Daily Milk Yields from AM/PM Milking Records

  • Lee, Deukhwan;Min, Hongrip
    • Journal of Animal Science and Technology
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    • v.55 no.6
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    • pp.489-500
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    • 2013
  • Daily milk yields on test days were estimated using morning or afternoon partial milk yields collected by official agencies and the accuracy of the estimates was determined. Test-day data for milk yields consisted of 3,156,734 records of AM/PM partial milking measurements of 255,437 milking Holstein cows from 3,708 farms collected from December 2008 to April 2013. A linear regression model (LRM) was applied to estimate daily milk yields using alternate AM/PM milk yield records within lactation stages, milking intervals, and parities on every daily milk yield. The alternate statistical approach was a non-linear hierarchical model (NHM) in which Brody's growth function was implemented by reflecting an animal's physiological milk production cycle. When compared with LRM, daily milk yields predicted by the NHM were assumed to be functionally related to day in milk (or lactation) stage, milking intervals, and partial milk yields. Since the results were in terms of accuracies based on comparisons of different statistical models, accuracies of estimates of daily milk yields by NHM were close to those determined by the LRM. The average of these accuracies was 0.94 for AM partial milk yields and 0.93 for PM partial milk yields for first calving cows. However, the accuracies of AM/PM milk yield estimations from cows under a calving stage higher than the first parity were 0.96 and 0.95, respectively. Correlations between the estimated daily milk yields and the actual daily milk yields ranged from 0.96~0.98. These accuracies were lower for unbalanced AM/PM milking intervals and the first calving cows. Overall, prediction of daily milk yields by NHM would be more appropriate than by LRM due to its flexibility under different milk yield-related circumstances, which provides an idea of the functional relationship between milking intervals and days in milk with daily milk yields from statistical viewpoints.

Application of Deep Learning to the Forecast of Flare Classification and Occurrence using SOHO MDI data

  • Park, Eunsu;Moon, Yong-Jae;Kim, Taeyoung
    • The Bulletin of The Korean Astronomical Society
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    • v.42 no.2
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    • pp.60.2-61
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    • 2017
  • A Convolutional Neural Network(CNN) is one of the well-known deep-learning methods in image processing and computer vision area. In this study, we apply CNN to two kinds of flare forecasting models: flare classification and occurrence. For this, we consider several pre-trained models (e.g., AlexNet, GoogLeNet, and ResNet) and customize them by changing several options such as the number of layers, activation function, and optimizer. Our inputs are the same number of SOHO)/MDI images for each flare class (None, C, M and X) at 00:00 UT from Jan 1996 to Dec 2010 (total 1600 images). Outputs are the results of daily flare forecasting for flare class and occurrence. We build, train, and test the models on TensorFlow, which is well-known machine learning software library developed by Google. Our major results from this study are as follows. First, most of the models have accuracies more than 0.7. Second, ResNet developed by Microsoft has the best accuracies : 0.77 for flare classification and 0.83 for flare occurrence. Third, the accuracies of these models vary greatly with changing parameters. We discuss several possibilities to improve the models.

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Relationship between position error and the inner configuration of GPS receivers (GPS 수신기의 내부설정과 위치오차의 관계)

  • Ahn, Jang-Young;Kim, Heung-Soo
    • Journal of the Korean Society of Fisheries and Ocean Technology
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    • v.41 no.3
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    • pp.213-221
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    • 2005
  • In order to get more accurate GPS position with the changes of the inner configuration setting of GPS receiver, the authors carried out measurements of the position at known it with one antenna and two GPS receivers manufactured by same company. We have investigated the accuracies of positions according to the change of the maskangle and receiving mode of output data in inner configuration of GPS receivers, and analyzed the relationships between numbers of satellites visibility and maskangles, and values of HDOP and maskangles. When the maskangles in inner configuration were set below 20 degree, the accuracies of positions were high. But if they were became bigger than 25 degree, standard deviations ot position errors and HDOPS of positions were became bigger. Numbers of satellites visibility(y) and maskangles(x) have relations with a formula, y = -0.1662x+9.9225, and values of HDOP(y) and maskangles(x) have relations with a formula, y = 0.6035 $e^{0.0517x}$. The results of position accuracies observed by two GPS receivers to the known position at same time were that average errors of position fixs by GPS receiver configured with NMEA0183 mode were 6.7m and standard deviations were 1.5m, and them by GPS receiver configured with binary mode were 5.0m and standard deviations were 1.1m respectively.

Rockfall Source Identification Using a Hybrid Gaussian Mixture-Ensemble Machine Learning Model and LiDAR Data

  • Fanos, Ali Mutar;Pradhan, Biswajeet;Mansor, Shattri;Yusoff, Zainuddin Md;Abdullah, Ahmad Fikri bin;Jung, Hyung-Sup
    • Korean Journal of Remote Sensing
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    • v.35 no.1
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    • pp.93-115
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    • 2019
  • The availability of high-resolution laser scanning data and advanced machine learning algorithms has enabled an accurate potential rockfall source identification. However, the presence of other mass movements, such as landslides within the same region of interest, poses additional challenges to this task. Thus, this research presents a method based on an integration of Gaussian mixture model (GMM) and ensemble artificial neural network (bagging ANN [BANN]) for automatic detection of potential rockfall sources at Kinta Valley area, Malaysia. The GMM was utilised to determine slope angle thresholds of various geomorphological units. Different algorithms(ANN, support vector machine [SVM] and k nearest neighbour [kNN]) were individually tested with various ensemble models (bagging, voting and boosting). Grid search method was adopted to optimise the hyperparameters of the investigated base models. The proposed model achieves excellent results with success and prediction accuracies at 95% and 94%, respectively. In addition, this technique has achieved excellent accuracies (ROC = 95%) over other methods used. Moreover, the proposed model has achieved the optimal prediction accuracies (92%) on the basis of testing data, thereby indicating that the model can be generalised and replicated in different regions, and the proposed method can be applied to various landslide studies.

Refinement of protein NMR structures using atomistic force field and implicit solvent model: Comparison of the accuracies of NMR structures with Rosetta refinement

  • Jee, Jun-Goo
    • Journal of the Korean Magnetic Resonance Society
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    • v.26 no.1
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    • pp.1-9
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    • 2022
  • There are two distinct approaches to improving the quality of protein NMR structures during refinement: all-atom force fields and accumulated knowledge-assisted methods that include Rosetta. Mao et al. reported that, for 40 proteins, Rosetta increased the accuracies of their NMR-determined structures with respect to the X-ray crystal structures (Mao et al., J. Am. Chem. Soc. 136, 1893 (2014)). In this study, we calculated 32 structures of those studied by Mao et al. using all-atom force field and implicit solvent model, and we compared the results with those obtained from Rosetta. For a single protein, using only the experimental NOE-derived distances and backbone torsion angle restraints, 20 of the lowest energy structures were extracted as an ensemble from 100 generated structures. Restrained simulated annealing by molecular dynamics simulation searched conformational spaces with a total time step of 1-ns. The use of GPU-accelerated AMBER code allowed the calculations to be completed in hours using a single GPU computer-even for proteins larger than 20 kDa. Remarkably, statistical analyses indicated that the structures determined in this way showed overall higher accuracies to their X-ray structures compared to those refined by Rosetta (p-value < 0.01). Our data demonstrate the capability of sophisticated atomistic force fields in refining NMR structures, particularly when they are coupled with the latest GPU-based calculations. The straightforwardness of the protocol allows its use to be extended to all NMR structures.