• Title/Summary/Keyword: Complex Database

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Use of Graph Database for the Integration of Heterogeneous Biological Data

  • Yoon, Byoung-Ha;Kim, Seon-Kyu;Kim, Seon-Young
    • Genomics & Informatics
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    • v.15 no.1
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    • pp.19-27
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    • 2017
  • Understanding complex relationships among heterogeneous biological data is one of the fundamental goals in biology. In most cases, diverse biological data are stored in relational databases, such as MySQL and Oracle, which store data in multiple tables and then infer relationships by multiple-join statements. Recently, a new type of database, called the graph-based database, was developed to natively represent various kinds of complex relationships, and it is widely used among computer science communities and IT industries. Here, we demonstrate the feasibility of using a graph-based database for complex biological relationships by comparing the performance between MySQL and Neo4j, one of the most widely used graph databases. We collected various biological data (protein-protein interaction, drug-target, gene-disease, etc.) from several existing sources, removed duplicate and redundant data, and finally constructed a graph database containing 114,550 nodes and 82,674,321 relationships. When we tested the query execution performance of MySQL versus Neo4j, we found that Neo4j outperformed MySQL in all cases. While Neo4j exhibited a very fast response for various queries, MySQL exhibited latent or unfinished responses for complex queries with multiple-join statements. These results show that using graph-based databases, such as Neo4j, is an efficient way to store complex biological relationships. Moreover, querying a graph database in diverse ways has the potential to reveal novel relationships among heterogeneous biological data.

Power System Analysis using OODB (객체지향 데이터베이스를 이용한 전력계통 해석)

  • 박지호;백용식
    • The Transactions of the Korean Institute of Electrical Engineers A
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    • v.53 no.5
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    • pp.257-265
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    • 2004
  • The complex documentation involved in power system analysis software require a well-defined and friendly database system. We have developed an object-oriented database management system for power system analysis, and have described load flow analysis and transient stability analysis using object-oriented database(OODB). Database management systems are widely used and achieve high reliability of data management in the engineering fields. However relational database system have shortcomings in application to power system analysis. ill relational database, the data model is too simple for modeling complex data and database languages are very different from programming languages. Object-oriented techniques are sufficiently powerful to support data-modeling requirements of GUI applications. The GUI is implemented using C++ on a MS windows platform. The OODB supports data modeling requirements of GUI applications and the performance is well acceptable for Gill applications.

UML Extension for Object-Relational Database Design - Focusing on Oracle11g - (객체-관계형 데이터베이스 설계를 위한 UML 확장 - Oracle11g를 중심으로 -)

  • Joo, Kyung-Soo;Jho, Do-Hyung
    • Journal of Internet Computing and Services
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    • v.12 no.6
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    • pp.149-159
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    • 2011
  • The current applications can be characterized as consisting of complex objects related by complex relationship. Therefore the relational database has been extended to object-relational database because of the complex objects. Accordingly, we need database design methodology for object-relational database. In this pager, we develop an integrated design methodology based on a extended UML class diagram for object-relational database. We make the extend UML class diagram by adding new stereotypes for object-relational database. Also we propose a guideline for transforming the extended UML class diagram to object-relational database schema. We use SQL:1999 as a object-relational data model and Oracle11g as a target object-relational database. We can build more easily and efficiently object-relational database for Oracle11g by using our methodology. Finally we applied our methodology on a computer classroom reservation system for evaluation the methodology.

QRS Complex Detection Algorithm Using M Channel Filter Banks (M 채널 필터 뱅크를 이용한 QRS complex 검출 알고리즘)

  • 김동석;전대근;이경중;윤형로
    • Journal of Biomedical Engineering Research
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    • v.21 no.2
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    • pp.165-174
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    • 2000
  • 본 논문에서는 M 채널 필터 뱅크를 이용하여 심전도 자동 진단 시스템에서 매우 중요한 파라미터로 사용되는 QRS complex 검출을 실시하였다. 제안된 알고리즘에서는 심전도 신호를 M개의 균일한 주파수 대역으로 분할(decomposition)하고, 분할된 서브밴드(subband) 신호들 중에서 QRS complex의 에너지 분포가 가장 많이 존재하는 5∼25Hz 영역의 서브밴드 신호들을 선택하여 feature를 계산함으로써 QRS complex 검출을 실시하였다. 제안된 알고리즘의 성능 비교를 위하여 MIT-BIH arrhythmia database를 사용하였으며, sensitivity는 99.82%, positive predictivity는 99.82, 평균 검출율은 99.67%로 기존의 알고리즘에 비해 높은 검출 성능을 나타내었다. 또한 polyphase representation을 이용하여 M 채널 필터 뱅크를 구현한 결과 연산 시간이 단추되어 실시간 검출이 가능함을 확인하였다.

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Multi-Level Fusion Processing Algorithm for Complex Radar Signals Based on Evidence Theory

  • Tian, Runlan;Zhao, Rupeng;Wang, Xiaofeng
    • Journal of Information Processing Systems
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    • v.15 no.5
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    • pp.1243-1257
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    • 2019
  • As current algorithms unable to perform effective fusion processing of unknown complex radar signals lacking database, and the result is unstable, this paper presents a multi-level fusion processing algorithm for complex radar signals based on evidence theory as a solution to this problem. Specifically, the real-time database is initially established, accompanied by similarity model based on parameter type, and then similarity matrix is calculated. D-S evidence theory is subsequently applied to exercise fusion processing on the similarity of parameters concerning each signal and the trust value concerning target framework of each signal in order. The signals are ultimately combined and perfected. The results of simulation experiment reveal that the proposed algorithm can exert favorable effect on the fusion of unknown complex radar signals, with higher efficiency and less time, maintaining stable processing even of considerable samples.

Object-Oriented Database Application for An Integrated Structural Design Process (일관 구조설계 시스템 구축에 있어서 객체지향 데이터 베이스의 도입)

  • 천진호;김홍국;이병해
    • Proceedings of the Computational Structural Engineering Institute Conference
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    • 1993.04a
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    • pp.79-85
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    • 1993
  • An integrated structural design system can define and process complex design information that occurs in each of the design stages for flexible cooperation. It can also reduce human error on sequential design steps: preliminary design, analysis and detailed design. Therefore, it's very important to have consistent semantic expression and procedure for structural design information that has complex relationships. In this study, we introduce the object-oriented concepts and object-oriented database thechnique that provides high level semantic expression in order to develop an integrated structural design system.

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Fixed-point Optimization of a QRS complex Detection Algorithm Using Wavelet Transform (웨이블릿을 이용한 QRS complex 검출 알고리즘의 고정 소수점 연산 최적화)

  • Park, Young-chul
    • The Journal of Korea Institute of Information, Electronics, and Communication Technology
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    • v.7 no.3
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    • pp.126-131
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    • 2014
  • In this study, QRS complex is detected by Wavelet Transform and it can be worked in 32bit fixed point operation thought optimization. First, ECG signal is passed though band pass filter. Second, it is transformed using one-band combined wavelet function from 3-band wavelet function. Third, it is passed though moving window integral. Finally, QRS complex is detected by decision rule. The proposed algorithm is evaluated using MIT-BIH arrhythmia database. Its all of process make progress 32-bit fixed-point operation and it makes table that high complexity operations like trigonometrical function. The detection algorithm evaluate through computer simulation.

A Design of Spatio-Temporal Data Model for Simple Fuzzy Regions

  • Vu Thi Hong Nhan;Chi, Jeong-Hee;Nam, Kwang-Woo;Ryu, Keun-Ho
    • Proceedings of the Korean Institute of Intelligent Systems Conference
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    • 2003.09a
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    • pp.384-387
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    • 2003
  • Most of the real world phenomena change over time. The ability to represent and to reason geographic data becomes crucial. A large amount of non-standard applications are dealing with data characterized by spatial, temporal and/or uncertainty features. Non-standard data like spatial and temporal data have an inner complex structure requiring sophisticated data representation, and their operations necessitate sophisticated and efficient algorithms. Current GIS technology is inefficient to model and to handle complex geographic phenomena, which involve space, time and uncertainty dimensions. This paper concentrates on developing a fuzzy spatio-temporal data model based on fuzzy set theory and relational data models. Fuzzy spatio-temporal operators are also provided to support dynamic query.

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A Research on the Proposal and Application of Data Model for an Integrated System of Reinforced Concrete Structures (철근 콘크리트 구조설계 통합시스템을 위한 데이터베이스 모델 제시와 응용)

  • 정윤철;천진호;서용표;이병해
    • Proceedings of the Computational Structural Engineering Institute Conference
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    • 1998.10a
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    • pp.342-351
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    • 1998
  • The purpose of this study is to develop a central database and a database management system to store and manage information systematically from each module of an integrated structural design system. In order to efficiently express structural design process related to the data which is very complex, we used an object-oriented modeling methodology to propose the possibility to apply a database schema for application programs in an integrated system for reinforced concrete structural design. Based on this model, we developed an interface between each module and central database. After modeled by using object modeling technique, the database was mapped by the relational database table. Then the central database and the interface were programed by using Visual C/syo ++/, a windows environmental development tool.

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Three-Phase Database Design for a Geographic Information System (지리(地理) 정보(情報) 시스템을 위한 삼단계(三段階) 데이터베이스 설계(設計))

  • Ock, Han-Suk;Kim, Gap-Youl;Kim, Chang-Hwan;Kim, Sang-Wook;Shin, Jae-Ho;Yang, Jae-Ung
    • Journal of Industrial Technology
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    • v.18
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    • pp.343-353
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    • 1998
  • Effective design of a database is essential for operating application systems efficiently. This paper discusses database design for a geographic information system. This goals of database design are multiple: to satisfy the information content requirements of the specified users and applications; to provide a natural and easy-to-understand structuring of the information; and to support processing requirements and any performance objectives such as response time, processing time, and storage space. Database design is a very complex process and is decomposed in three phases: conceptual, logical, and physical design. In this paper, we first collect and analyze the requirements for a geographic information system. We also perform database design for these requirements through the three design phases systematically. Our results would contribute to the effective construction of a database for a geographic information system.

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