• Title/Summary/Keyword: Dynamic programming algorithm

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An Efficient Method for Multiple Sequence Alignment using Subalignment Refinement (부분서열정렬 개선 기법을 사용한 효율적인 복수서열정렬에 관한 알고리즘)

  • Kim, Jin;Jung, Woo-Cheol;Uhmn, Saang-Yong
    • Journal of KIISE:Software and Applications
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    • v.30 no.9
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    • pp.803-811
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    • 2003
  • Multiple sequence alignment is a useful tool to identify the relationships among protein sequences. Dynamic programming is the most widely used algorithm to obtain multiple sequence alignment with optimal cost. However, dynamic programming cannot be applied to certain cost function due to its drawback and cannot be used to produce optimal multiple sequence alignment. We propose sub-alignment refinement algorithm to overcome the problem of dynamic programming. Also we show proposed algorithm can solve the problem of dynamic programming efficiently.

An effcient algorithm for multiple sequence alignment (복수 염기서열 정렬을 위한 한 유용성 알고리즘)

  • Kim, Jin;Song, Min-Dong
    • Proceedings of the Korean Information Science Society Conference
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    • 1998.10c
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    • pp.51-53
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    • 1998
  • 3개 이상의 DNA 혹은 단백질의 염기서열을 정렬하는 복수 염기서열 정렬(multiple sequence alignment)방법은 염기서열들 사이의 진화관계, gene regulation, 단백질의 구조와 기능에 관한 연구에 필수적인 도구이다. 복수 염기서열 정렬문제는 NP-complete 문제군에 속하며, 이 문제를 해결하기 위하여 가장 유용하게 사용되는 알고리즘으로는 dynamic programming이 있다. Dynamic programming은 주어진 입력 염기서열 군들에 대한 최적의 정렬을 생산할 수 있다. 그러나 dynamic programming의 단점은 오랜 실행시간이 요구되며, 때로는 dynamic programming의 속성 때문에 이 알고리즘을 사용하여도 주어진 입력 염기서열 군들에 대한 최적의 정렬을 얻어내지 못하는 경우가 있다. 본 연구에서는 이러한 dynamic programming의 문제를 해결하기 위하여 genetic algorithm을 복수 염기서열 정렬문제에 적용하였다. 본 논문에서는 genetic algorithm의 design과 적용방법을 기술하였다. 본 연구에서 제안된 genetic algorithm을 사용하여 dynamic programming의 단점이었던 오랜 실행시간을 줄일 수 있었으며, dynamic programming이 제공하지 못하는 최적의 염기서열 정렬을 제공할 수 있었다.

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Cellular Parallel Processing Networks-based Dynamic Programming Design and Fast Road Boundary Detection for Autonomous Vehicle (셀룰라 병렬처리 회로망에 의한 동적계획법 설계와 자율주행 자동차를 위한 도로 윤곽 검출)

  • 홍승완;김형석
    • The Transactions of the Korean Institute of Electrical Engineers D
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    • v.53 no.7
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    • pp.465-472
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    • 2004
  • Analog CPPN-based optimal road boundary detection algorithm for autonomous vehicle is proposed. The CPPN is a massively connected analog parallel array processor. In the paper, the dynamic programming which is an efficient algorithm to find the optimal path is implemented with the CPPN algorithm. If the image of road-boundary information is utilized as an inter-cell distance, and goals and start lines are positioned at the top and the bottom of the image, respectively, the optimal path finding algorithm can be exploited for optimal road boundary detection. By virtue of the parallel and analog processing of the CPPN and the optimal solution of the dynamic programming, the proposed road boundary detection algorithm is expected to have very high speed and robust processing if it is implemented into circuits. The proposed road boundary algorithm is described and simulation results are reported.

Extraction of Corresponding Points of Stereo Images Based on Dynamic Programming (동적계획법 기반의 스테레오영상의 대응점 탐색)

  • Lee, Ki-Yong;Lee, Joon-Woong
    • Journal of Institute of Control, Robotics and Systems
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    • v.17 no.5
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    • pp.397-404
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    • 2011
  • This paper proposes an algorithm capable of extracting corresponding points between a pair of stereo images based on dynamic programming. The purpose of extracting the corresponding points is to provide the stereo disparity data to a road-slope estimation algorithm with high accuracy and in real-time. As the road-slope estimation algorithm does not require dense disparity data, the proposed stereo matching algorithm aims at extracting corresponding points accurately and quickly. In order to realize this contradictory goal, this paper exploits dynamic programming, and minimizes matching candidates using vertical components of color edges. Furthermore, the typical occlusion problem in stereo vision is solved. The proposed algorithm is proven to be effective through experiments with various images captured on the roads.

Optimal Seam-line Determination for the Image Mosaicking Using the Adaptive Cost Transform (적응 정합 값 변환을 이용한 영상 모자이크 과정에서의 최적 Seam-Line 결정)

  • CHON Jaechoon;KIM Hyongsuk
    • The Transactions of the Korean Institute of Electrical Engineers D
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    • v.54 no.3
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    • pp.148-155
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    • 2005
  • A seam-line determination algorithm is proposed to determine image border-line in mosaicing using the transformation of gray value differences and dynamic programming. Since visually good border-line is the one along which pixel differences are as small as possible, it can be determined in association with an optimal path finding algorithm. A well-known effective optimal path finding algorithm is the Dynamic Programming (DP). Direct application of the dynamic programming to the seam-line determination causes the distance effect, in which seam-line is affected by its length as well as the gray value difference. In this paper, an adaptive cost transform algorithm with which the distance effect is suppressed is proposed in order to utilize the dynamic programming on the transformed pixel difference space. Also, a figure of merit which is the summation of fixed number of the biggest pixel difference on the seam-line (SFBPD) is suggested as an evaluation measure of seamlines. The performance of the proposed algorithm has been tested in both quantitively and visually on various kinds of images.

Analysis of Dynamic Production Planning Model Using Linear Programming (선형계획을 이용한 동적 생산계획 모형의 분석)

  • Chang, Suk-Hwa
    • Journal of Korean Institute of Industrial Engineers
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    • v.19 no.3
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    • pp.71-79
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    • 1993
  • Dynamic production planning problems are to determine the optimal production times and production quantities of product for discrete finite periods. In previous many researches, the solutions for these problems have been developed through the algorithms using dynamic programming. The purpose of this research is to suggest the new algorithm using linear programming. This research is to determine optimal production quantities of product in each period to satisfy dynamic for discrete finite periods, minimizing the total of production cost and inventory holding cost. Cost functions are concave, and no backlogging for product is allowed. The new algorithm for capacity constrained problem is developed.

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Application to Generation Expansion Planning of Evolutionary Programming (진화 프로그래밍의 전원개발계획에의 적용 연구)

  • Won, Jong-Ryul
    • The Transactions of the Korean Institute of Electrical Engineers A
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    • v.50 no.4
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    • pp.180-187
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    • 2001
  • This paper proposes an efficient evolutionary programming algorithm for solving a generation expansion planning(GEP) problem known as a highly-nonlinear dynamic problem. Evolutionary programming(EP) is an optimization algorithm based on the simulated evolution (mutation, competition and selection). In this paper, new algorithm is presented to enhance the efficiency of the EP algorithm for solving the GEP problem. By a domain mapping procedure, yearly cumulative capacity vectors are transformed into one dummy vector, whose change can yield a kind of trend in the cost value. To validate the proposed approach, this algorithm is tested on two cases of expansion planning problems. Simulation results show that the proposed algorithm can provide successful results within a resonable computational time compared with conventional EP and dynamic programming.

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Analog Celluar Nonlinear Circuits-Based Dynamic Programming with Subgoal Setting (서브 골 설정에 의한 아날로그 셀룰라 비선형 회로망 기반 동적계획법)

  • Kim, Hyong-Suk;Park, Jin-Hee;Son, Hong-Rak;Lee, Jae-Chul;Lee, Wang-Hee
    • The Transactions of the Korean Institute of Electrical Engineers D
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    • v.49 no.10
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    • pp.582-590
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    • 2000
  • A fast optimal path planning algorithm using the analog Cellular Nonlinear Circuits(CNC) is proposed. The analog circuits based optimal path planning is very useful since most of the optimal path planning problems require real time computation. There has already been a previous study to implement the dynamic programming with analog circuits. However, it could not be applied for the practically large size of problems since the algorithm employs the mechanism of reducing its input current/voltage by the amount of cost, which causes outputs of distant cells to become zero. In this study, a subgoal-based dynamic programming algorithm to compute the optimal path is proposed. In the algorithm, the optimal paths are computed regardless of the distance between the starting and the goal points. It finds subgoals starting from the starting point when the output of the starting cell is raised from its initial value. The subgoal is set as the next initial position to find the next subgoal until the final goal is reached. The global optimality of the proposed algorithm is discussed and two different kinds of simulations have been done for the proposed algorithm.

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Advanced controller design for AUV based on adaptive dynamic programming

  • Chen, Tim;Khurram, Safiullahand;Zoungrana, Joelli;Pandey, Lallit;Chen, J.C.Y.
    • Advances in Computational Design
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    • v.5 no.3
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    • pp.233-260
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    • 2020
  • The main purpose to introduce model based controller in proposed control technique is to provide better and fast learning of the floating dynamics by means of fuzzy logic controller and also cancelling effect of nonlinear terms of the system. An iterative adaptive dynamic programming algorithm is proposed to deal with the optimal trajectory-tracking control problems for autonomous underwater vehicle (AUV). The optimal tracking control problem is converted into an optimal regulation problem by system transformation. Then the optimal regulation problem is solved by the policy iteration adaptive dynamic programming algorithm. Finally, simulation example is given to show the performance of the iterative adaptive dynamic programming algorithm.

Control of an stochastic nonlinear system by the method of dynamic programming

  • Choi, Wan-Sik
    • 제어로봇시스템학회:학술대회논문집
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    • 1994.10a
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    • pp.156-161
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    • 1994
  • In this paper, we consider an optimal control problem of a nonlinear stochastic system. Dynamic programming approach is employed for the formulation of a stochastic optimal control problem. As an optimality condition, dynamic programming equation so called the Bellman equation is obtained, which seldom yields an analytical solution, even very difficult to solve numerically. We obtain the numerical solution of the Bellman equation using an algorithm based on the finite difference approximation and the contraction mapping method. Optimal controls are constructed through the solution process of the Bellman equation. We also construct a test case in order to investigate the actual performance of the algorithm.

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