• Interdisciplinary Bio Central
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• v.4 no.1
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• pp.1.1-1.7
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• 2012

Background: The F-box proteins represent one of the largest families of proteins in eukaryotes. Apart from being a component of the ubiquitin (Ub)/26 S proteasome pathways, their regulatory roles in other cellular and developmental pathways have also been reported. One interesting feature of the genes encoding the proteins of this particular family is their variable selection patterns across different lineages. This resulted in the presence of lineage specific F-box proteins across different species. Findings: In this study, 48 non-redundant F-box proteins in E. siliculosus have been identified by a homology based approach and classified into three classes based on their variable C-terminal domains. A greater number of the F-box proteins have domains similar to the ones identified in other species. On the other hand, when the proteins having unknown or no C-terminal domain (as predicted by InterProScan) were analyzed, it was found that some of them have the polyglutamine repeats. To gain evolutionary insights on the genes encoding the F-box proteins, their selection patterns were analyzed and a strong positive selection was observed which indicated the adaptation potential of the members of this family. Moreover, four lineage specific F-box genes were found in E. siliculosus with no identified homolog in any other species. Conclusions: This study describes a genome wide in silico analysis of the F-box proteins in E. siliculosus which sheds light on their evolutionary patterns. The results presented in this study provide a strong foundation to select candidate sequences for future functional analysis.

• Journal of the Korea Academia-Industrial cooperation Society
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• v.13 no.11
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• pp.5615-5622
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• 2012

Seasonal distributions of the viral abundance and physicochemical parameters were analyzed at three different regions in Gwangyang Bay. Morphological structure of marine virus was observed using transmission electron microscopy. Most of marine virus had bacteriophage-like structure, but some were similar with eukaryotic microalgal virus, Ectocarpus siliculosus virus (EsV). Viral abundance at Group 1 (closed eutrophic region) was higher than viral abundances at Group 2 (closed oligotrophic region) and Group 3 (open oligotrophic region). Seasonal abundances of marine virus at Group 1 were dynamically changed. The viral density was variably changed from maximum $7.33{\times}10^8ml^{-1}$ in August to minimum $0.3{\times}10^8ml^{-1}$ in December and maintained middle value in spring and autumn. The concentration of nitrogen and phosphate sources was correlated with viral abundance. Particularly, seasonal change of dissolved oxygen concentration was opposite to the variation of viral abundance. These results showed that viral abundances were closely related with fluctuation of marine physicochemical environment in Gwangyang bay.

• ALGAE
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• v.27 no.1
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• pp.21-32
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• 2012

We report an oxidative burst triggered by prostaglandin $A_2(PGA_2)$ in the brown algal kelp Laminaria digitata, constituting the first such discovery in an alga and the second finding of an oxidative burst triggered by a prostaglandin in a living organism. The response is more powerful than the oxidative burst triggered by most other chemical elicitors in Laminaria. Also, it is dose-dependent and cannot be inhibited by diphenylene iodonium, suggesting that another source than NAD(P)H oxidase is operational in the production of reactive oxygen species. Despite the very strong oxidative response, rather few effects at other levels of signal transduction pathways could be identified. $PGA_2$ does not increase lipolysis (free fatty acids) in Laminaria, and only one oxylipin (15-hydroxyeicosatetraenoic acid; 15-HETE) was found to be upregulated in Laminaria. In a subsequent set of experiments in the genome model Ectocarpus siliculosus, none of 5 selected candidate genes, all established participants in various stress responses, showed any significant differences in their expression profiles.