• Title/Summary/Keyword: Hierarchical clustering method

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An Agglomerative Hierarchical Variable-Clustering Method Based on a Correlation Matrix

  • Lee, Kwangjin
    • Communications for Statistical Applications and Methods
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    • v.10 no.2
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    • pp.387-397
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    • 2003
  • Generally, most of researches that need a variable-clustering process use an exploratory factor analysis technique or a divisive hierarchical variable-clustering method based on a correlation matrix. And some researchers apply a object-clustering method to a distance matrix transformed from a correlation matrix, though this approach is known to be improper. On this paper an agglomerative hierarchical variable-clustering method based on a correlation matrix itself is suggested. It is derived from a geometric concept by using variate-spaces and a characterizing variate.

Microarray data analysis using relative hierarchical clustering (상대적 계층적 군집 방법을 이용한 마이크로어레이 자료의 군집분석)

  • Woo, Sook Young;Lee, Jae Won;Jhun, Myoungshic
    • Journal of the Korean Data and Information Science Society
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    • v.25 no.5
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    • pp.999-1009
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    • 2014
  • Hierarchical clustering analysis helps easily exploring massive microarray data and understanding biological phenomena with dendrogram. But, because hierarchical clustering algorithms only consider the absolute similarity, it is difficult to illustrate a relative dissimilarity, which consider not only the distance between a pair of clusters, but also how distant are they from the rest of the clusters. In this study, we introduced the relative hierarchical clustering method proposed by Mollineda and Vidal (2000) and compared hierarchical clustering method and relative hierarchical method using the simulated data and the real data in the various situations. The evaluation of the quality of two hierarchical methods was performed using percentage of incorrectly grouped points (PIGP), homogeneity and separation.

A Two-Stage Method for Near-Optimal Clustering (최적에 가까운 군집화를 위한 이단계 방법)

  • 윤복식
    • Journal of the Korean Operations Research and Management Science Society
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    • v.29 no.1
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    • pp.43-56
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    • 2004
  • The purpose of clustering is to partition a set of objects into several clusters based on some appropriate similarity measure. In most cases, clustering is considered without any prior information on the number of clusters or the structure of the given data, which makes clustering is one example of very complicated combinatorial optimization problems. In this paper we propose a general-purpose clustering method that can determine the proper number of clusters as well as efficiently carry out clustering analysis for various types of data. The method is composed of two stages. In the first stage, two different hierarchical clustering methods are used to get a reasonably good clustering result, which is improved In the second stage by ASA(accelerated simulated annealing) algorithm equipped with specially designed perturbation schemes. Extensive experimental results are given to demonstrate the apparent usefulness of our ASA clustering method.

Magnetoencephalography Interictal Spike Clustering in Relation with Surgical Outcome of Cortical Dysplasia

  • Jeong, Woorim;Chung, Chun Kee;Kim, June Sic
    • Journal of Korean Neurosurgical Society
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    • v.52 no.5
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    • pp.466-471
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    • 2012
  • Objective : The aim of this study was to devise an objective clustering method for magnetoencephalography (MEG) interictal spike sources, and to identify the prognostic value of the new clustering method in adult epilepsy patients with cortical dysplasia (CD). Methods : We retrospectively analyzed 25 adult patients with histologically proven CD, who underwent MEG examination and surgical resection for intractable epilepsy. The mean postoperative follow-up period was 3.1 years. A hierarchical clustering method was adopted for MEG interictal spike source clustering. Clustered sources were then tested for their prognostic value toward surgical outcome. Results : Postoperative seizure outcome was Engel class I in 6 (24%), class II in 3 (12%), class III in 12 (48%), and class IV in 4 (16%) patients. With respect to MEG spike clustering, 12 of 25 (48%) patients showed 1 cluster, 2 (8%) showed 2 or more clusters within the same lobe, 10 (40%) showed 2 or more clusters in a different lobe, and 1 (4%) patient had only scattered spikes with no clustering. Patients who showed focal clustering achieved better surgical outcome than distributed cases (p=0.017). Conclusion : This is the first study that introduces an objective method to classify the distribution of MEG interictal spike sources. By using a hierarchical clustering method, we found that the presence of focal clustered spikes predicts a better postoperative outcome in epilepsy patients with CD.

Development of the Combinatorial Agglomerative Hierarchical Clustering Method Using the Measure of Cohesion (응집력 척도를 활용한 계층별-조결합군락화 기법의 개발)

  • Jeong, Hyeon-Tae;Choe, In-Su
    • Journal of Korean Society for Quality Management
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    • v.18 no.1
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    • pp.48-54
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    • 1990
  • The purpose of this study is to design effective working systems which adapt to change in human needs by developing an method which forms into optimal groups using the measure of cohesion. Two main results can be derived from the study as follows : First, the clustering method based on the entropic measure of cohesion is predominant with respect to any other methods proposed in designing the work groups, since this clustering criterion includes symmetrical relations of total work groups and the dissimilarity as well as the similarity relations of predicate value, the clustering method based on this criterion is suitable for designing the new work structure. Second, total work group is clustered as the workers who have the equal predicate value and then clustering results are produced through the combinatorial agglomerative hierarchical clustering method. This clustering method present more economic results than the method that clustering the total work group do.

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Agglomerative Hierarchical Clustering Analysis with Deep Convolutional Autoencoders (합성곱 오토인코더 기반의 응집형 계층적 군집 분석)

  • Park, Nojin;Ko, Hanseok
    • Journal of Korea Multimedia Society
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    • v.23 no.1
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    • pp.1-7
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    • 2020
  • Clustering methods essentially take a two-step approach; extracting feature vectors for dimensionality reduction and then employing clustering algorithm on the extracted feature vectors. However, for clustering images, the traditional clustering methods such as stacked auto-encoder based k-means are not effective since they tend to ignore the local information. In this paper, we propose a method first to effectively reduce data dimensionality using convolutional auto-encoder to capture and reflect the local information and then to accurately cluster similar data samples by using a hierarchical clustering approach. The experimental results confirm that the clustering results are improved by using the proposed model in terms of clustering accuracy and normalized mutual information.

Customer Load Pattern Analysis using Clustering Techniques (클러스터링 기법을 이용한 수용가별 전력 데이터 패턴 분석)

  • Ryu, Seunghyoung;Kim, Hongseok;Oh, Doeun;No, Jaekoo
    • KEPCO Journal on Electric Power and Energy
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    • v.2 no.1
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    • pp.61-69
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    • 2016
  • Understanding load patterns and customer classification is a basic step in analyzing the behavior of electricity consumers. To achieve that, there have been many researches about clustering customers' daily load data. Nowadays, the deployment of advanced metering infrastructure (AMI) and big-data technologies make it easier to study customers' load data. In this paper, we study load clustering from the view point of yearly and daily load pattern. We compare four clustering methods; K-means clustering, hierarchical clustering (average & Ward's method) and DBSCAN (Density-Based Spatial Clustering of Applications with Noise). We also discuss the relationship between clustering results and Korean Standard Industrial Classification that is one of possible labels for customers' load data. We find that hierarchical clustering with Ward's method is suitable for clustering load data and KSIC can be well characterized by daily load pattern, but not quite well by yearly load pattern.

Top-down Hierarchical Clustering using Multidimensional Indexes (다차원 색인을 이용한 하향식 계층 클러스터링)

  • Hwang, Jae-Jun;Mun, Yang-Se;Hwang, Gyu-Yeong
    • Journal of KIISE:Databases
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    • v.29 no.5
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    • pp.367-380
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    • 2002
  • Due to recent increase in applications requiring huge amount of data such as spatial data analysis and image analysis, clustering on large databases has been actively studied. In a hierarchical clustering method, a tree representing hierarchical decomposition of the database is first created, and then, used for efficient clustering. Existing hierarchical clustering methods mainly adopted the bottom-up approach, which creates a tree from the bottom to the topmost level of the hierarchy. These bottom-up methods require at least one scan over the entire database in order to build the tree and need to search most nodes of the tree since the clustering algorithm starts from the leaf level. In this paper, we propose a novel top-down hierarchical clustering method that uses multidimensional indexes that are already maintained in most database applications. Generally, multidimensional indexes have the clustering property storing similar objects in the same (or adjacent) data pares. Using this property we can find adjacent objects without calculating distances among them. We first formally define the cluster based on the density of objects. For the definition, we propose the concept of the region contrast partition based on the density of the region. To speed up the clustering algorithm, we use the branch-and-bound algorithm. We propose the bounds and formally prove their correctness. Experimental results show that the proposed method is at least as effective in quality of clustering as BIRCH, a bottom-up hierarchical clustering method, while reducing the number of page accesses by up to 26~187 times depending on the size of the database. As a result, we believe that the proposed method significantly improves the clustering performance in large databases and is practically usable in various database applications.

A Study on Partial Pattern Estimation for Sequential Agglomerative Hierarchical Nested Model (SAHN 모델의 부분적 패턴 추정 방법에 대한 연구)

  • Jang, Kyung-Won;Ahn, Tae-Chon
    • Proceedings of the KIEE Conference
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    • 2005.10b
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    • pp.143-145
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    • 2005
  • In this paper, an empirical study result on pattern estimation method is devoted to reveal underlying data patterns with a relatively reduced computational cost. Presented method performs crisp type clustering with given n number of data samples by means of the sequential agglomerative hierarchical nested model (SAHN). Conventional SAHN based clustering requires large computation time in the initial step of algorithm. To deal with this concern, we modified overall process with a partial approach. In the beginning of this method, we divide given data set to several sub groups with uniform sampling and then each divided sub data group is applied to SAHN based method. The advantage of this method reduces computation time of original process and gives similar results. Proposed is applied to several test data set and simulation result with conceptual analysis is presented.

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LVQ_Merge Clustering Algorithm for Cell Image Extraction (세포 영상 추출을 위한 LVQ_Merge 군집화 알고리즘)

  • Kwon, Hee Yong;Kim, Min Su;Choi, Kyung Wan;Kwack, Ho Jic;Yu, Suk Hyun
    • Journal of Korea Multimedia Society
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    • v.20 no.6
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    • pp.845-852
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    • 2017
  • In this paper, we propose a binarization algorithm using LVQ-Merge clustering method for fast and accurate extraction of cells from cell images. The proposed method clusters pixel data of a given image by using LVQ to remove noise and divides the result into two clusters by applying a hierarchical clustering algorithm to improve the accuracy of binarization. As a result, the execution speed is somewhat slower than that of the conventional LVQ or Otsu algorithm. However, the results of the binarization have very good quality and are almost identical to those judged by the human eye. Especially, the bigger and the more complex the image, the better the binarization quality. This suggests that the proposed method is a useful method for medical image processing field where high-resolution and huge medical images must be processed in real time. In addition, this method is possible to have many clusters instead of two cluster, so it can be used as a method to complement a hierarchical clustering algorithm.