• Title/Summary/Keyword: Multiple missing values

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Application of SOLAS to the Multiple Imputation for Missing Data

  • Moon, Sung-Ho;Kim, Hyun-Jeong;Shin, Jae-Kyoung
    • Journal of the Korean Data and Information Science Society
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    • v.14 no.3
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    • pp.579-590
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    • 2003
  • When we analyze incomplete data, i.e., data with missing values, we need treatment for the missing values. A common way to deal with this problem is to delete the cases with missing values. Various other methods have been developed. Among them are EM algorithm and regression algorithm which can estimate missing values and impute the missing elements with the estimated values. In this paper, we introduce multiple imputation software SOLAS which generates multiple data sets and imputes with them.

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Large tests of independence in incomplete two-way contingency tables using fractional imputation

  • Kang, Shin-Soo;Larsen, Michael D.
    • Journal of the Korean Data and Information Science Society
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    • v.26 no.4
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    • pp.971-984
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    • 2015
  • Imputation procedures fill-in missing values, thereby enabling complete data analyses. Fully efficient fractional imputation (FEFI) and multiple imputation (MI) create multiple versions of the missing observations, thereby reflecting uncertainty about their true values. Methods have been described for hypothesis testing with multiple imputation. Fractional imputation assigns weights to the observed data to compensate for missing values. The focus of this article is the development of tests of independence using FEFI for partially classified two-way contingency tables. Wald and deviance tests of independence under FEFI are proposed. Simulations are used to compare type I error rates and Power. The partially observed marginal information is useful for estimating the joint distribution of cell probabilities, but it is not useful for testing association. FEFI compares favorably to other methods in simulations.

Handling Incomplete Data Problem in Collaborative Filtering System

  • Noh, Hyun-ju;Kwak, Min-jung;Han, In-goo
    • Proceedings of the KAIS Fall Conference
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    • 2003.11a
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    • pp.105-110
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    • 2003
  • Collaborative filtering is one of the methodologies that are most widely used for recommendation system. It is based on a data matrix of each customer's preferences of products. There could be a lot of missing values in such preference. data matrix. This incomplete data is one of the reasons to deteriorate the accuracy of recommendation system. Multiple imputation method imputes m values for each missing value. It overcomes flaws of single imputation approaches through considering the uncertainty of missing values.. The objective of this paper is to suggest multiple imputation-based collaborative filtering approach for recommendation system to improve the accuracy in prediction performance. The experimental works show that the proposed approach provides better performance than the traditional Collaborative filtering approach, especially in case that there are a lot of missing values in dataset used for recommendation system.

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Application of Multiple Imputation Method in Analyzing Data with Missing Continuous Covariates

  • Ghasemizadeh Tamar, S.;Ganjali, M.
    • The Korean Journal of Applied Statistics
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    • v.21 no.4
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    • pp.659-664
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    • 2008
  • Missing continuous covariates are pervasive in the use of generalized linear models for medical data. Multiple imputation is the most common and easy-to-do method of dealing with missing covariate data. However, there are always serious warnings in using this method. There should be concern to make imputed values more proper. In this paper, proper imputation from posterior predictive distribution is developed for implementing with arbitrary priors. We use empirical distribution of the posterior for approximating the posterior predictive distribution, to sample from it. This method is preferable in comparison with a presented imputation method of us which uses a full model to impute missing values using available software. The proposed methods are implemented on glucocorticoid data.

Identification of Differentially Expressed Genes Using Tests Based on Multiple Imputations

  • Kim, Sang Cheol;Yu, Donghyeon
    • Quantitative Bio-Science
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    • v.36 no.1
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    • pp.23-31
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    • 2017
  • Datasets from DNA microarray experiments, which are in the form of large matrices of expression levels of genes, often have missing values. However, the existing statistical methods including the principle components analysis (PCA) and Hotelling's t-test are not directly applicable for the datasets having missing values due to the fact that they assume the observed dataset is complete in general. Many methods have been proposed in previous literature to impute the missing in the observed data. Troyanskaya et al. [1] study the k-nearest neighbor (kNN) imputation, Kim et al. [2] propose the local least squares (LLS) method and Rubin [3] propose the multiple imputation (MI) for missing values. To identify differentially expressed genes, we propose a new testing procedure when the missing exists in the observed data. The proposed procedure uses the Stouffer's z-scores and combines the test results of individual imputed samples, which are dependent to each other. We numerically show that the proposed test procedure based on MI performs better than the existing test procedures based on single imputation (SI) by comparing their ROC curves. We apply the proposed method to analyzing a public microarray data.

A comparison of imputation methods using machine learning models

  • Heajung Suh;Jongwoo Song
    • Communications for Statistical Applications and Methods
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    • v.30 no.3
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    • pp.331-341
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    • 2023
  • Handling missing values in data analysis is essential in constructing a good prediction model. The easiest way to handle missing values is to use complete case data, but this can lead to information loss within the data and invalid conclusions in data analysis. Imputation is a technique that replaces missing data with alternative values obtained from information in a dataset. Conventional imputation methods include K-nearest-neighbor imputation and multiple imputations. Recent methods include missForest, missRanger, and mixgb ,all which use machine learning algorithms. This paper compares the imputation techniques for datasets with mixed datatypes in various situations, such as data size, missing ratios, and missing mechanisms. To evaluate the performance of each method in mixed datasets, we propose a new imputation performance measure (IPM) that is a unified measurement applicable to numerical and categorical variables. We believe this metric can help find the best imputation method. Finally, we summarize the comparison results with imputation performances and computational times.

Imputation of Multiple Missing Values by Normal Mixture Model under Markov Random Field: Application to Imputation of Pixel Values of Color Image (마코프 랜덤 필드 하에서 정규혼합모형에 의한 다중 결측값 대체기법: 색조영상 결측 화소값 대체에 응용)

  • Kim, Seung-Gu
    • Communications for Statistical Applications and Methods
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    • v.16 no.6
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    • pp.925-936
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    • 2009
  • There very many approaches to impute missing values in the iid. case. However, it is hardly found the imputation techniques in the Markov random field(MRF) case. In this paper, we show that the imputation under MRF is just to impute by fitting the normal mixture model(NMM) under several practical assumptions. Our multivariate normal mixture model based approaches under MRF is applied to impute the missing pixel values of 3-variate (R, G, B) color image, providing a technique to smooth the imputed values.

Handling Incomplete Data Problem in Collaborative Filtering System

  • Noh, Hyun-Ju;Kwak, Min-Jung;Han, In-Goo
    • Journal of Intelligence and Information Systems
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    • v.9 no.2
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    • pp.51-63
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    • 2003
  • Collaborative filtering is one of the methodologies that are most widely used for recommendation system. It is based on a data matrix of each customer's preferences of products. There could be a lot of missing values in such preference data matrix. This incomplete data is one of the reasons to deteriorate the accuracy of recommendation system. There are several treatments to deal with the incomplete data problem such as case deletion and single imputation. Those approaches are simple and easy to implement but they may provide biased results. Multiple imputation method imputes m values for each missing value. It overcomes flaws of single imputation approaches through considering the uncertainty of missing values. The objective of this paper is to suggest multiple imputation-based collaborative filtering approach for recommendation system to improve the accuracy in prediction performance. The experimental works show that the proposed approach provides better performance than the traditional Collaborative filtering approach, especially in case that there are a lot of missing values in dataset used for recommendation system.

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Exploiting Patterns for Handling Incomplete Coevolving EEG Time Series

  • Thi, Ngoc Anh Nguyen;Yang, Hyung-Jeong;Kim, Sun-Hee
    • International Journal of Contents
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    • v.9 no.4
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    • pp.1-10
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    • 2013
  • The electroencephalogram (EEG) time series is a measure of electrical activity received from multiple electrodes placed on the scalp of a human brain. It provides a direct measurement for characterizing the dynamic aspects of brain activities. These EEG signals are formed from a series of spatial and temporal data with multiple dimensions. Missing data could occur due to fault electrodes. These missing data can cause distortion, repudiation, and further, reduce the effectiveness of analyzing algorithms. Current methodologies for EEG analysis require a complete set of EEG data matrix as input. Therefore, an accurate and reliable imputation approach for missing values is necessary to avoid incomplete data sets for analyses and further improve the usage of performance techniques. This research proposes a new method to automatically recover random consecutive missing data from real world EEG data based on Linear Dynamical System. The proposed method aims to capture the optimal patterns based on two main characteristics in the coevolving EEG time series: namely, (i) dynamics via discovering temporal evolving behaviors, and (ii) correlations by identifying the relationships between multiple brain signals. From these exploits, the proposed method successfully identifies a few hidden variables and discovers their dynamics to impute missing values. The proposed method offers a robust and scalable approach with linear computation time over the size of sequences. A comparative study has been performed to assess the effectiveness of the proposed method against interpolation and missing values via Singular Value Decomposition (MSVD). The experimental simulations demonstrate that the proposed method provides better reconstruction performance up to 49% and 67% improvements over MSVD and interpolation approaches, respectively.

Veri cation of Improving a Clustering Algorith for Microarray Data with Missing Values

  • Kim, Su-Young
    • The Korean Journal of Applied Statistics
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    • v.24 no.2
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    • pp.315-321
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    • 2011
  • Gene expression microarray data often include multiple missing values. Most gene expression analysis (including gene clustering analysis); however, require a complete data matric as an input. In ordinary clustering methods, just a single missing value makes one abandon the whole data of a gene even if the rest of data for that gene was intact. The quality of analysis may decrease seriously as the missing rate is increased. In the opposite aspect, the imputation of missing value may result in an artifact that reduces the reliability of the analysis. To clarify this contradiction in microarray clustering analysis, this paper compared the accuracy of clustering with and without imputation over several microarray data having different missing rates. This paper also tested the clustering efficiency of several imputation methods including our propose algorithm. The results showed it is worthwhile to check the clustering result in this alternative way without any imputed data for the imperfect microarray data.