• Title/Summary/Keyword: PubMed

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Implementation of PubMed Mirroring System, PubMedIF (PubMed 미러링 시스템, PubMedIF의 개발)

  • 이유진;차재혁
    • Proceedings of the Korean Information Science Society Conference
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    • 2003.10b
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    • pp.841-843
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    • 2003
  • 본 논문은 PubMed를 통한 데이터 미러링 방법 및 시스템 개발에 대해 기술한다. 기존의 PubMed 데이터베이스 검색 시스템은 원격의 사용자와 network로 연결되었기 때문에 대역폭의 제한을 받으며, Web query interface를 이용하기 때문에 검색 방법이 제한적이다. 또한 Text mining과 같은 local application의 이용에는 효과적이지 못하다. 본 논문에서는 효과적인 미러링을 위한 검색어를 제안하고, network 연결 상황에서 발생할 수 있는 비정상적 종료를 극복할 수 있는 PubMedIF를 개발하였다.

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IntoPub: A Directory Server for Bioinformatics Tools and Databases

  • Jung, Dong-Soo;Kim, Ji-Han;Lee, Sang-Hyuk;Lee, Byung-Wook
    • Interdisciplinary Bio Central
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    • v.3 no.3
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    • pp.12.1-12.3
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    • 2011
  • Bioinformatics tools and databases are useful for understanding and processing various biological data. Numerous resources are being published each year. It is not a trivial task to find up-to-date relevant tools and databases. Moreover, no server is available to provide comprehensive coverage on bioinformatics resources in all biological fields. Here, we present a directory server called IntoPub that provides information on web resources. First, we downloaded XML-formatted abstracts containing web URLs from the NCBI PubMed database by using 'ESearch-EFetch' function in the NCBI E-utilities. The information is obtained from abstracts in the PubMed by extracting 'www' or 'http' prefixes. Then, we cu-rate the downloaded abstracts both in automatic and manual fashion. As of July 2011, the IntoPub database has 12,118 abstracts containing web URLs from 174 journals. Our anal-ysis shows that the number of abstracts containing web resources has increased signifi-cantly every year. The server has been tested by many biologists from several countries to get opinion on user satisfaction, usefulness, practicability, and ease of use since January 2010. In the IntoPub web server, users can easily find relevant bioinformatics resources, as compared to searching in PubMed. IntoPub will continue to update and incorporate new web resources from PubMed and other literature databases. IntoPub, available at http://into.kobic.re.kr/, is updated every day.

A Study on Quality Evaluation of Medical Web DBs : PubMed and Embase (의학 분야 Web DB의 품질평가 -PubMed와 Embase를 대상으로-)

  • Kim, Sang-Jun
    • Journal of the Korean Society for Library and Information Science
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    • v.38 no.2
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    • pp.161-187
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    • 2004
  • This study concerns DB quality of the Web databases which has been produced in medical science. For the quality evaluation of Embase and PubMed, 10 evaluating criteria were developed on the basis of literature review. The evaluation result showed that PubMed has superiority to the currentness, accuracy, completness, consistency, ease of use, customer support, searchability, cost, and network & H/W on DB, but Embase has only superiority to the coverage. It is needed for purchasing, user training, and library service based on the above evaluation result.

A Study on PubMed meta-data aggregator and dynamic RSS channel generator development (PubMed 메타데이터 수집기 및 동적 RSS 채널 생성기 개발 연구)

  • Kim, sun-tae;Kim, jay-hoon;Han, hee-jun;Hyeon, Mi-Hwan;Lee, Tae-Seok;Yae, yong-hee;Yeo, Il-Yeon;Yun, Hui-Jun
    • Proceedings of the Korea Contents Association Conference
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    • 2008.05a
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    • pp.832-835
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    • 2008
  • PubMed stands alone among database related to biomedical literature. On this thesis, PubMed meta-data at some point is collected and built. The service model which serve the dynamic RSS channel, one of the core services in an web2.0 era, is designed and developed. E-Utilities service(API) served by PubMed are analyzed. The meta-data aggregator and builder are developed. Also the dynamic RSS channel generator is developed and the method how it could be used in the RSS reader is suggested.

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A study on connecting system of the PubMed and interlibrary loan system (PubMed와 상호 대차시스템의 연계방안)

  • 최홍식
    • Proceedings of the Korean Society for Information Management Conference
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    • 2000.08a
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    • pp.165-168
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    • 2000
  • 본 연구는 현재 국내에서 별개로 운용되고 있는 PubMed와 원문을 입수하기 위한 상호대차시스템을 상호연계하는 방안을 모색하여, 신청과정의 번거로움을 해소하고, 편리하고 정확한 업무처리와 신속한 원문정보서비스가 이루어질 수 있는 현실적 방안을 제안하고자 한다.

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A Study on Domestic Medical Database with Comparison to PubMed (PubMed를 중심으로 비교한 국내 의학데이터베이스의 실태조사 및 분석 연구)

  • Kim, Hyeon-Ji;Nam, Seo-Jin
    • Proceedings of the Korean Society for Information Management Conference
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    • 2018.08a
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    • pp.39-46
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    • 2018
  • 본 연구는 국외 의학데이터베이스인 PubMed를 중심으로 국내 의학데이터베이스인 KoreaMed와 KMBase의 특징 및 기능을 비교하고 개선방향을 도출해보고자 하였다. 이를 위해 선행연구를 토대로 비교 분석 기준을 추출하고 각 데이터베이스의 공식 홈페이지를 통해 그 특징들을 정리하였다, 그 결과 국내 의학데이터베이스는 공통적으로 콘텐츠 측면에서 시소러스와 저널선정기준을 개선하고, 검색기능 측면에서 상세 검색 필드, 관련 정보자원간의 링크, 검색결과의 정렬과 공유 기능을 보완할 필요가 있다는 것을 확인하였다.

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A Study on the Quality Evaluation of Scholarly Web Databases Focused on NDSL, PubMed, Scopus, and Web of Science (학술 웹 데이터베이스의 품질 비교 평가 : NDSL, P ubMed, Scopus와 Web of Science를 중심으로)

  • Kim, Sang-Jun
    • Journal of Information Management
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    • v.36 no.3
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    • pp.127-165
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    • 2005
  • This study is focused on the quality of the Web databases which has been produced in science. For the quality evaluation of NDSL, PubMed, Scopus, and WoS, 10 evaluating criteria are developed on the basis of literature review. The evaluation results show that NDSL and PubMed are superior in the currentness and cost. Scopus and WoS are superior in the information of citing and the analysis tool. It is needed for purchasing, user training, and library service based on the above evaluation results.

Study of Complementary Medical Therapy for Allergic Rhinitis in PubMed (PubMed를 통해 살펴 본 알레르기 비염에 대한 보완 의학적 최신 연구 경향)

  • Jung, Hye-Mi;Cho, Min-Jung;Seo, Un-Kyo
    • The Journal of Internal Korean Medicine
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    • v.30 no.3
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    • pp.534-549
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    • 2009
  • Objectives : To study trends in complementary medical therapy for the allergic rhinitis. This study analyzed research on allergic rhinitis in PubMed. Methods : We searched PubMed related to complementary medical therapy for allergic rhinitis. We analyzed 25 research papers and examined published journals, years countries, and their methods, objectives, results, interventions, participants, periods and instruments of assessment. Results : The method of studies was mostly randomized, double-blind, placebo-controlled trial. There were research papers concerning treatment and prevention with herbal medicine, acupuncture, diet, etc. There were more positive results compared to negative results for treatment and prevention. Most studies were carried out during the winter/spring period. The median for number of participants was 90.54 persons. Diagnostic criteria for enrolment were nasal symptoms, allergic skin test, serum, nasal discharge allergen specific IgE eosinophil, etc. Assessment for outcomes were nasal symptoms, serum, nasal discharge allergen specific IgE eosinophil and Quality of Life Questionnaire. Conclusions : It is necessary to study effects of acupuncture and herb medicines for allergic rhinitis and more in-depth research about trends in complementary medical therapy for allergic rhinitis.

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Systemic Review: The Study on myofascial pain syndrome(MPS) with acupuncture in PubMed (PubMed에서 myofascial pain syndrome(MPS)과 acupuncture로 검색한 최근 연구 경향)

  • Byun, Im-jeung;Nam, Sang-su;Choi, Do-young
    • Journal of Acupuncture Research
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    • v.19 no.6
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    • pp.171-183
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    • 2002
  • Objective : To research the trends of study related to myofascial pain syndrome(MPS) and acupuncture in PubMed, and to establish the hereafter direction of myofascial pain syndrome(MPS) with acupuncture. Methods : We searched in PubMed, with myofascial pain syndrome and acupuncture, trigger point and acupuncture limitted by abstract. Results : 1. The pattern of the study was as follows : Review article(11), Clinical(11) rondomized controlled trials(21). We further estimated 24 articles. 2. Many of these studies provide equivocal results because of designs, sample size and the other, affirmative view is 10 articles, contradictive view is 6 articles, and somewhat reservative regards are 8 articles for therapeutic effect of myofascial pain syndrome with acupuncture. 3. Suggestions on further endolphin related research, neurophysiology, biophysics and phamacology are made. 4. More clinical data would be needed to prove effects of myofascial pain syndrome with acupuncture.

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