• Title/Summary/Keyword: Sen%27s method

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The analysis of groundwater table variations in Sylhet region, Bangladesh

  • Zafor, Md. Abu;Alam, Md. Jahir Bin;Rahman, Md. Azizur;Amin, Mohammad Nurul
    • Environmental Engineering Research
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    • v.22 no.4
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    • pp.369-376
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    • 2017
  • The trend analysis of the study was acquired by selecting multiyear monthly groundwater table data and monitors the wells in each sub-district under the study area. The intention of this research was to analyze the outcome of the non-parametric Mann-Kendall test at greater than the significance level which is 95% of groundwater level in Sylhet. The aptitude is effective at two conjunctures where the confidence bounds are 95% and it meets the estimate line of Sen's. To calculate and assess the spatial differences in the inanition of groundwater table, geostatistical methods was applied based on data from 27 groundwater wells during the period from January 1975 to December 2011 which were obtained from a secondary source, Bangladesh Water Development Board. The geographic information system was used to assess the spatial change in order to find the level of groundwater. Cross-validation errors were found within an advisable level in estimating the groundwater depth with different interpolation models of ordinary kriging methods. Finally, surface maps were generated with the best-fitted model. The southeast region was found highly vulnerable from groundwater level point of view. Northern region was detected highest hazard prone area for diverge groundwater using kriging method.

Genome-wide Analysis of Aberrant DNA Methylation for Identification of Potential Biomarkers in Colorectal Cancer Patients

  • Fang, Wei-Jia;Zheng, Yi;Wu, Li-Ming;Ke, Qing-Hong;Shen, Hong;Yuan, Ying;Zheng, Shu-Sen
    • Asian Pacific Journal of Cancer Prevention
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    • v.13 no.5
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    • pp.1917-1921
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    • 2012
  • Background: Colorectal cancer is one of the leading causes of mortality worldwide. Genome wide analysis studies have identified sequence mutations causing loss-of-function that are associated with disease occurrence and severity. Epigenetic modifications, such DNA methylation, have also been implicated in many cancers but have yet to be examined in the East Asian population of colorectal cancer patients. Methods: Biopsies of tumors and matched non-cancerous tissue types were obtained and genomic DNA was isolated and subjected to the bisulphite conversion method for comparative DNA methylation analysis on the Illumina Infinium HumanMethylation27 BeadChip. Results: Totals of 258 and 74 genes were found to be hyper- and hypo-methylated as compared to the individual's matched control tissue. Interestingly, three genes that exhibited hypermethylation in their promoter regions, CMTM2, ECRG4, and SH3GL3, were shown to be significantly associated with colorectal cancer in previous studies. Using heatmap cluster analysis, eight hypermethylated and 10 hypomethylated genes were identified as significantly differentially methylated genes in the tumour tissues. Conclusions: Genome-wide methylation profiling facilitates rapid and simultaneous analysis of cancerous cells which may help to identify methylation markers with high sensitivity and specificity for diagnosis and prognosis. Our results show the promise of the microarray technology in identification of potential methylation biomarkers for colorectal cancers.