• Title/Summary/Keyword: Single sequence

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Extension of a 5'- or 3'-end Genomic DNA Sequence by a Single PCR Amplification

  • Jeon, Taeck J.
    • Journal of Integrative Natural Science
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    • v.1 no.3
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    • pp.230-233
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    • 2008
  • A simple and rapid method is described for extending the 5'- or 3'-end genomic sequence of a known partial sequence by only a single round of PCR. This method involves digesting and ligating genomic and plasmid DNAs, and amplifying the 5'-upstream or 3'-end downstream sequence of the known DNA sequence, using two primers, one gene specific and the other plasmid specific. A single round of PCR amplification is sufficient to produce gene-specific bands detectable in gels. By using this approach, 5'-end genomic sequence of the D-amoeba sams gene was extended.

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Study on the Time Delay of Single Sequence for Select Sequence (선택시퀀스 기능을 위한 단일시퀀스의 시간지연에 관한 연구)

  • You, Jeong-Bong
    • Proceedings of the IEEK Conference
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    • 2009.05a
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    • pp.305-307
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    • 2009
  • When we design the control system used Programmable Logic Controller(PLC), we program the main algorithm by Ladder Diagram(LD) among the standard language. We can substitute the select sequence function by the unique sequence. We can implement this function by the delay time. Therefore this thesis show the select sequence function by the unique sequence and we confirmed its feasibility through actual example.

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Secondary Structure for RNA Aptamers Binding to Guanine-Rich Sequence in the 5'-UTR RNA of N-Ras Oncogene

  • Cho, Bongrae
    • Journal of the Korean Chemical Society
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    • v.65 no.2
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    • pp.121-124
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    • 2021
  • RNA molecules which bind to the G-rich sequence in the 5'-UTR RNA which plays an important role in expression of N-ras, were selected. The secondary structures of five selected RNA aptamers including primer sequence were found by the CLC RNA workbench ver. 4.2 program (www.clcbio.com) and investigated with RNA structural probes such as RNase T1 which has specificity for a G in single-stranded region, RNase V1 specific for double strand and nuclease S1 specific for single strand. The generalized secondary structure model was proposed and characterized. It was composed of a central long double strand region flanked by single strand region at both end sides. The double strand region had an internal single-strand region and bulges. The single strand loop in the right side was composed of four or five nucleotides.

Suppression of Zero Sequence Current Caused by Dead-time for Dual Inverter With Single Source (단전원 듀얼 인버터의 데드타임으로 인한 영상전류 억제 방법)

  • Yoon, Bum-Ryeol;Kim, Tae-Hyeong;Lee, June-Hee;Lee, June-Seok
    • The Transactions of the Korean Institute of Power Electronics
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    • v.27 no.2
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    • pp.126-133
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    • 2022
  • This study proposes a suppression of zero sequence current (ZSC), which is caused by zero sequence voltage (ZSV) for a dual two-level inverter with single DC bus. Large output voltages enable the dual inverter with single DC bus to improve a system efficiency compared with single inverter. However, the structure of dual inverter with single DC bus inevitably generates ZSC, which reduces the system efficiency and causes a current ripple. ZSV is also produced by dead time, and its magnitude is determined by the DC bus and current direction. This study presents a novel space vector modulation method that allows the instantaneous suppression of ZSC. Based on a condition where a switching period is twice a sampling (control) period, the proposed control method is implemented by injecting the offset voltage at the primary inverter. This offset voltage is injected in half of the switching period to suppress the ZSC. Simulation and experiments are used to compare the proposed and conventional methods to determine the ZSC suppression performance.

Improved Method of Single Sequence Control in Process Control designed by SFC (SFC로 설계된 공정제어에서 개선된 단일 시퀀스 제어 방법)

  • You, Jeong-Bong;Kim, Min-Young;Jeon, Ho-Ik
    • Journal of the Semiconductor & Display Technology
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    • v.6 no.2 s.19
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    • pp.1-4
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    • 2007
  • Programmable Logic Controller(PLC) is the most widely utilized and plays an important role in industrial control system. Among PLC languages, Sequential Function Chart(SFC) is performed in small scale industrial process. On programming by SFC, a single sequence is utilized to control the simple process. In this paper, we propose the method that describe the improved single sequence and confirm its feasibility through an actual example.

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Nucleotide Sequence Homology in Rotaviruses (Rotaviruses의 염기배열 유사성 측정)

  • ;Spendlove, Rex S.;Barnett, Bill B
    • Korean Journal of Microbiology
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    • v.26 no.3
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    • pp.155-161
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    • 1988
  • Nucleotide sequence homology between bovine, simian, and porcine rotavirus was determined by the RNA:RNA hybridization technique. Single stranded RNA, prepared in vitro with EDTA activated endogeneous viral RNA polymerase, was hhbridized with tritium labeled bovine rotavirus genomic RNA. The heteroduplex RNA was treated with single stranded RNA specific ribonucleases and the RNase resistant hybrid RNA was precipitated, and collected by filtration on a filter paper. Seventy four percent RNA sequence homology between bovine and simian rotavirus and 8 percent RNA sequence homology between bovine and porcine rotavirus was confirmed by hybridization between tritium labeled single stranded RNA and viral genomic RNA.

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Micro-computed tomographic evaluation of single-cone obturation with three sealers

  • Sahar Zare;Ivy Shen;Qiang Zhu;Chul Ahn;Carolyn Primus;Takashi Komabayashi
    • Restorative Dentistry and Endodontics
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    • v.46 no.2
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    • pp.25.1-25.12
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    • 2021
  • Objectives: This study used micro-computed tomography (µCT) to compare voids and interfaces in single-cone obturation among AH Plus, EndoSequence BC, and prototype surface pre-reacted glass ionomer (S-PRG) sealers and to determine the percentage of sealer contact at the dentin and gutta-percha (GP) interfaces. Materials and Methods: Fifteen single-rooted human teeth were shaped using ProTaper NEXT size X5 rotary files using 2.5% NaOCl irrigation. Roots were obturated with a single-cone ProTaper NEXT GP point X5 with AH Plus, EndoSequence BC, or prototype S-PRG sealer (n = 5/group). Results: The volumes of GP, sealer, and voids were measured in the region of 0-2, 2-4, 4-6, and 6-8 mm from the apex, using image analysis of sagittal µCT scans. GP volume percentages were: AH Plus (75.5%), EndoSequence BC (87.3%), and prototype S-PRG (94.4%). Sealer volume percentages were less: AH Plus (14.3%), EndoSequence BC (6.8%), and prototype S-PRG (4.6%). Void percentages were AH Plus (10.1%), EndoSequence BC (5.9%), and prototype S-PRG (1.0%). Dentin-sealer contact ratios of AH Plus, EndoSequence BC, and prototype S-PRG groups were 82.4% ± 6.8%, 71.6% ± 25.3%, and 70.2% ± 9.4%, respectively. GP-sealer contact ratios of AH Plus, EndoSequence BC, and prototype S-PRG groups were 65.6% ± 29.1%, 80.7% ± 25.8%, and 87.0% ± 8.6%, respectively. Conclusions: Prototype S-PRG sealer created a low-void obturation, similar to EndoSequence BC sealer with similar dentin-sealer contact (> 70%) and GP-sealer contact (> 80%). Prototype S-PRG sealer presented comparable filling quality to EndoSequence BC sealer.

Reduced-state sequence estimation for trellis-coded 8PSK/cyclic prefixed single carrier (트렐리스 부호화된 8PSK/CPSC를 위한 RSSE 방식)

  • 고상보;강훈철;좌정우
    • Proceedings of the IEEK Conference
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    • 2003.11c
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    • pp.20-23
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    • 2003
  • A reduced-state sequence estimation(RSSE) for trellis-coded (TC) 8PSK/cyclic prefixed single carrier(CPSC) with minimum mean-square error-liner equalization(MMSE-LE) on frequency-selective Rayleigh fading channels is proposed. The Viterbi algorithm (VA) is used to search for the best path through the reduced-state trellis combined equalization and TCM decoding. The symbol error probability of the proposed scheme is confirmed by computer simulation.

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Detection of Mycobacterium leprae by Nested PCR Targeting M. leprae-Specific Repetitive Element (RLEP) Sequence

  • Wang, Hye-Young;Kim, Yeun;Bang, Hye-Eun;Kim, Hyun-Chul;Cho, Sang-Nae;Lee, Hye-Young
    • Biomedical Science Letters
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    • v.13 no.1
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    • pp.33-38
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    • 2007
  • The aim of this work was to validate a rapid and an accurate method for detecting Mycobacterium leprae in clinical specimens using nested PCR targeting M. leprae-specific repetitive element (RLEP) sequence. The primers were derived from the RLEP sequence which yield a 272 bp outer product and a 230 bp inner product. The specificity and the sensitivity of the nested PCR were compared with those of single PCR for detecting M. leprae using DNAs isolated from reference strain and various species of Mycobacterium. The results showed that the sensitivity of the nested PCR was about 100 to 1,000 times higher than that of the single PCR and also showed that both the single and the nested PCR were highly specific to M. leprae. Subsequently, the usefulness of the single and nested PCR was evaluated with clinical samples isolated from leprosy patients. The number of positive detections by the single and the nested PCR with a total of 20 specimens from leprosy patients were 9 (45%) and 20 (100%), respectively. The results clearly showed that nested PCR has highest sensitivity in detecting M. leprae from clinical specimens. Therefore, nested primers targeting RLEP sequence developed in this study seems to be useful to detect the presence of M. leprae.

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A Modified Mutation Detection Method for Large-scale Cloning of the Possible Single Nucleotide Polymorphism Sequences

  • Jiang, Ming-Chung;Jiang, Pao-Chu;Liao, Ching-Fong;Lee, Ching-Chiu
    • BMB Reports
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    • v.38 no.2
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    • pp.191-197
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    • 2005
  • Although the human genome has been nearly completely sequenced, the functions and the roles of the vast majority of the genes, and the influences of single nucleotide polymorphisms (SNPs) in these genes are not entirely known. A modified mutation detection method was developed for large-scale cloning of the possible SNPs between tumor and normal cells for facilitating the identification of genetic factors that associated with cancer formation and progression. The method involves hybridization of restriction enzyme-cut chromosomal DNA, cleavage and modification of the sites of differences by enzymes, and differential cloning of sequence variations with a designed vector. Experimental validations of the presence and location of sequence variations in the isolated clones by PCR and DNA sequencing support the capability of this method in identifying sequence differences between tumor cells and normal cells.