• Title/Summary/Keyword: Species

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A report of 156 unrecorded bacterial species of Republic of Korea belonging to the phyla Acidobacteriota, Deinococcota, Actinomycetota, Bacillota, Bacteroidota, and Pseudomonadota isolated in 2022

  • Kiseong Joh;Wonyong Kim;Myung Kyum Kim;Seung-Bum Kim;Chang-Jun Cha;Wan-Taek Im;Taegun Seo;Che-Ok Jeon;Jung-Hoon Yoon
    • Journal of Species Research
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    • v.12 no.4
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    • pp.374-414
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    • 2023
  • As part of a comprehensive investigation of indigenous prokaryotic species in Republic of Korea in 2022, 156 bacterial strains were isolated from diverse environmental habitats. These strains were assigned to six phyla, namely Acidobacteriota, Deinococcota, Actinomycetota, Bacillota, Bacteroidota, and Pseudomonadota. Each strain was identified based on 16S rRNA gene sequence similarity (>98.7%) and the formation of robust phylogenetic clades with their closest reported species. Among isolates, there is one species belonging to the phylum Acidobacteriota, one species belonging to the phylum Deinococcota, 28 species belonging to the phylum Actinomycetota, 19 species belonging to the phylum Bacillota, 19 species belonging to the phylum Bacteroidota, and 88 species belonging to the phylum Pseudomonadota (comprising 34 species of the class Alphaproteobacteria, 20 species of the class Betaproteobacteria, and 34 species of the class Gammaproteobacteria). Based on 16S rRNA gene sequence analysis, each strain was assigned to independent and predefined bacterial species. Since there were no published or official reports regarding these 156 isolates in Republic of Korea, they are reported as unrecorded species in Republic of Korea. The Gram stain, colony and cell morphology, basic biochemical characteristic, isolation source, and strain ID of each species are described in the species descriptions.

The Occurrence of Kranz Type Species Among the Noxious Weeds on Cultivated Land of Taiwan and their Biochemical Subdivision

  • Lin, Chin Ho;Yin, Shan Tai
    • Korean Journal of Weed Science
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    • v.8 no.2
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    • pp.133-140
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    • 1988
  • One hundred and one noxious weeds on cultivated land of Taiwan were investigated for the occurrence of "Kranz" leaf anatomy and activities of PEP carboxylase and $C_4$ acid decarboxylating enzymes : NADP-malic enzyme, NAD-malic enzyme, PEP carboxykinase. Based on the leaf anatomy and a/b chlorophyll ratio, twenty-seven species exhibit "Kranz" type leaf anatomy, and seventy-four species were found without it. Among the species investigated, Digitaria radicosa (Presl) Miq., Leptochloa chinensis (L.) Nees, and Sporobolus fertilis (Steud.) W. D. Clayton in the Gramineae were first recorded as $C_4$ plants. Twenty-sven species of "Kranz" type leaf anatomy, include those of monocotyledon ; sixteen species in Gramineae, six species in Cyperaceae. Those of dicotyledon ; two species each in Euphorbiaceae and Amaranthaceae and one species in Portulacaceae. The subtype of fourteen previously uninvestigated species among twenty-seven species were further determined. The properties of the three decarboxylating enzyme from representative species were also characterized.

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Scale Insects (Stenorrhyncha) Occurred on Fruit Trees in Korea (국내 과수에 발생하는 깍지벌레(진딧물아목)의 종류)

  • 권기면;한만종
    • Korean journal of applied entomology
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    • v.42 no.4
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    • pp.279-288
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    • 2003
  • A total of 29 scale insect species belonging to 21 genera of five families were recognized on 11 fruit trees on the basis of specimens collected from 2001 to 2002 and specimens deposited in the Insect Collection of NIAST in Korea. Ten species were recognized on apple, nine species on pear, three species on peach, 14 species on unshiu orange, nine species on persimmon, two species on Japanese plum, one species on japanese apricot, 10 species on junos orange, one species on grape, four species on jujube and three species on kiwi fruit.

Spatial and Temporal Distribution of Macrobenthos in Intertidal Hard Bottoms in Dokdo Island

  • Kim, Jong-Chun;Park, Kang-Wook;Yoo, Kyong-Dong;Jung, Sung-Yong
    • Korean Journal of Environment and Ecology
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    • v.29 no.2
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    • pp.221-227
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    • 2015
  • This study was carried out to measure seasonal changes in the community structure and species composition of marobenthos in the intertidal area of Dokdo. The macrobenthos identified during this study was comprised of 36 species: predominately 25 species of mollusks(69.4 %), 6 species of arthropods(16.7 %), 3 species of echinodermata(8.3 %) and 1 species of cnidaria (5.6 %). The number of marobenthos species ranged from 27 in Spring to 33 in Autumn. In terms of the top 10 dominant species, there were 7 species of mollusks and 3 species of arthropods in the this study. After analyzing the bray-curtis similarity, it was divided into two large groups(A, B). Such group classification matched the SIMPROF(Similarity Profile Analysis) and the one-way ANOSIM(Analysis of similarities) analysis.

Amphipods(Crustacea: Malacostraca) fauna from Chujado Island in Korea

  • Kyung-Won Kim;Xin Zhang;Jae-Hong Choi;Jun Kim;So-Yeon Shin;Young-Hyo Kim
    • Journal of Species Research
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    • v.12 no.1
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    • pp.1-26
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    • 2023
  • A faunal study on Amphipods belonging to the class Malacostraca was conducted 26-29 August 2021 at 12 sites in Chujado Island, Korea. This study found that 68 amphipod species in 39 genera, 19 families were living on Chujado Island. Among these 19 families, the family Caprellidae (20 species) showed the highest abundance. Ampithoidae (7 species) and Dexaminidae (6 species) were subdominant families. The species Stenothoe valida Dana, 1852 (found at 10 of 12 sites) was the most frequent and widespread species. Caprella scaura Templeton, 1836 was identified at 9 of 12 sites and had the highest frequency of appearance among 20 species of Caprellidae. Among the 68 species, Ampithoe waialua J.L. Barnard, 1970 and Melita nagatai Yamato, 1987 are newly recorded species in Korean fauna. These newly recorded species are fully illustrated and compared with related species. We provide an amphipod fauna in Chujado Island with a list, figures, and a table.

A new species of the genus Monoblastus Hartig (Hymenoptera: Ichneumonidae: Tryphoninae) with a key to species from South Korea

  • Jin-Kyung Choi
    • Journal of Species Research
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    • v.12 no.4
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    • pp.321-325
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    • 2023
  • A new species, Monoblastus forsythia sp. nov. is described from South Korea. All specimens of this new species were collected on Forsythia koreana (Nakai). A taxonomic study of South Korean Monoblastus was initiated by Uchida in 1930, and until now four species have been recorded from South Korea. The genus Monoblastus is a Holarctic genus with 31 described species, 14 species are Nearctic, seven are Western Palaearctic region, and nine species occur in Eastern Palaearctic region. In the study, I provide description and photos of both sexes of this new species. Also, modified key to species of the South Korean Monoblastus is provided.

Photosynthetic Performances of Temperate Sargassum and Kelp Species Growing in the Same Habitat

  • Murakami, Hiroshige;Serisawa, Yukihiko;Kurashima, Akira;Yokohama, Yasutsugu
    • ALGAE
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    • v.19 no.3
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    • pp.207-216
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    • 2004
  • Characteristics of photosynthesis-light and photosynthesis-temperature relationships were seasonally compared among 4 species, two temperate Sargassurn (S. ringgoldianum and S. spathulophyllum) and two temperate kelp (Ecklonia cava and Eisenia bicyclis), growing in the same habitat in Oura Bay, Shimoda, central Japan. The photosynthesis-irradiance (P-I) curve of each species at the in situ temperature and the photosynthesis-temperature (P-T) curve at near saturation irradiance (400μmol·m^(-2)·s^(-1)) were determined by using differential gas-volumeters. Maximum photosynthetic rates (Prnax) for P-I curves of the two Sargassurn species were higher from summer to autumn than from winter to spring, while those of the two kelp species showed little difference among seasons. Net photosynthetic rates (Pn) at 100-400μmol·m^(-2)·s^(-1) of the Sargassurn species were higher than those of the kelp species in autumn, spring and summer, while in winter the rates were about the same between the Sargassurn and kelp species. Among seasons, the light saturation index (1k) values, dark respiration rates and light compensation points of Sargassurn species differed more than those of kelp species. Optimum temperature for P-T curves of Sargassurn species was 29℃ and that of kelp species was 27℃ in summer, while in winter the former was 27℃ and the latter was 25℃. Pn at 400 μmol·m^(-2)·s^(-1) at 10-33℃ of Sargassurn species were considerably higher than those of kelp species from spring to summer, while from autumn to winter the rates at 5-27℃ were about the same between the two. At supra-optimum temperatures, Pn of kelp species decreased more sharply than those of Sargassurn species in each season. These facts indicate that the two temperate Sargassurn species have a higher potential photosynthetic performance under warmer conditions than the two temperate kelp species even though they grow in the same habitat.

Molecular Data Concerning Alloploid Character and the Origin of Chloroplast and Mitochondrial Genomes in the Liverwort Species Pellia borealis

  • Pacak, Andrezej
    • Journal of Plant Biotechnology
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    • v.2 no.2
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    • pp.101-108
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    • 2000
  • The liverwort Pellia borealis is a diploid, monoecious, allopolypliod species (n=18) that as it was postulated, originated after hybridization and duplication of chromosome sets of two cryptic species: Pellia epiphylta-species N (n=9) and Pellia epiphylla-species 5 (n=9). Our recent results have supported the allopolyploid origin of P.borealis. We have shown that the nuclear genome of P.borealis consists of two nuclear genomes: one derived from P.epiphylla-species N and the other from P.epiphylla-species 5. In this paper we show the origin of chloroplast and mitochondrial genomes in an allopolyploid species P.borealis. To our knowledge there is no information concerning the way of mitochondria and chloroplast inheritance in Brophyta. Using an allopolyploid species of p. borealis as a model species we have decided to look into chloroplast and mitochondrial genomes of P.borealis, P.epiphylla-species N and P.epiphylla-species S for nucleotide sequences that would allow us to differentiate between both cryptic species and to identify the origin of organelle genomes in the alloploid species. We have amplified and sequenced a chloroplast $tRNA^{Leu}$ gene (anticodon UAA) containing an intron that has shown to be highly variable in a nucleotide sequence and used for plant population genetics. Unfortunately these sequences were identical in all three liverwort species tested. The analysis of the nucleotide sequence of chloroplast, an intron containing $tRNA^{Gly}$ (anticodon UCC) genes, gave expected results: the intron nucleotide sequence was identical in the case of both P.borealis and P.epiphyllaspecies N, while the sequence obtained from P.epiphyllasperies S was different in several nucleotide positions. These results were confirmed by the nucleotide sequence of another chloroplast molecular marker the chloroplast, an intron-contaning $tRNA^{Lys}$ gene (anticodon UUU). We have also sequenced mitochondrial, an intron-containing $tRNA^{Ser}$ gene (anticodon GCU) in all three liverwort species. In this case we found that, as in the case of the chloroplast genome, P.borealis mitochondrial genome was inherited from P.epiphylla-species N. On the basis of our results we claim that both organelle genomes of P.borealis derived from P.epiphylla-species N.

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An Ecological Study on the Benthic macroinvertebrates in the Upper Region of the South Han River and Naktong River - Pongwha and Youngwol Region - (한강.낙동강 상류의 저서성 대형무척추동물에 관한 생태학적 연구 -봉화.영월권역을 중심으로-)

  • 배경석;원두희;유병태;김민영
    • Journal of environmental and Sanitary engineering
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    • v.14 no.4
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    • pp.50-68
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    • 1999
  • The present study was performed to examine on the fauna and standing crops of benthic macroinvertebrates in Pongwha and Youngwol region of upper parts of south han river and Naktons river. The Actual site suvry was caried out on the two times during the April·June to October·November, 1988. Main five areas are Mt. Awrawe(1,067m), Mt. Sontal (1,236m), Mt. Munsu(1,206m), Peak Okyopong(357m) and Mt. Pungnak(760m) area. Total taxa of benthic macroinvertebrates of the study area were 118 species, 45families12 orders, 5 classes in 4 phyla. Occurrence species according to the major taxa of aquatic insects were 35 species (29.66%) in ephemeroptera, 25 species(21.19%) in trichoptera, 25 species(21.19%) hemiptera, 1 species(0.85%) in megaloptera. Non-aqautic insect were 5 species in mollusca, 3 ratio was 8.5 percent. Occurrence species(plecoptera) at clean waters were appeared 12 species at Mt. Awrawe and Sontal area. Occurrence species at each survey area was 67 species at Mt. Awrawe area, 60 species at Mt. Sontal area, 43 species at Mt. Munsu area, 37 species at Mt. P'ungnak area and 34 species at Peak Okyo area, respectively. Species diversity indices were 2.96~3.80 at Mt. Awrawe area, 2.79~3.62 at Mt. sontal area, but 2.64~3.12, 1.59~2.46 and 1.98~2.59 at, Mt. Munsu, P'ungnak and Peak Okyo area, respectively. In this region, occurrence species and individual density were smaller than that of Dong river with good habitat, but those were more abundant than that of Poseong river with similar environment conditions. Therefore, occurrence species and individual density of the present survey region were appeared as somewhat abundant.

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A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria

  • Ko, Kwan Su;Cha, Chang-Jun;Im, Wan-Taek;Kim, Seung-Bum;Seong, Chi-Nam;Bae, Jin-Woo;Jahng, Kwangyeop;Cho, Jang-Cheon;Joh, Ki-seong;Lee, Soon Dong
    • Journal of Species Research
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    • v.6 no.1
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    • pp.1-14
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    • 2017
  • As a subset study to discover indigenous prokaryotic species in Korea in 2014, a total of 34 bacterial strains assigned to the phylum Actinobacteria were isolated from various environmental samples collected from activate sludge, biotite, freshwater, gut of marine organisms, mud flat, sediment, soil, spent mushroom compost and sea water. On the basis of high 16S rRNA gene sequence similarity and a tight phylogenetic association with the closest species, it was revealed that each strain was assigned to independent and previously described bacterial species, with the exception of one isolate. There is no official report that these 34 species included in the phylum Actinobacteria have been described in Korea: 6 species of 5 genera in the order Corynebacteriales, 1 species of 1 genus in the order Frankiales, 2 species of 2 genera in the Micromonosporales, 14 species of 10 genera in Micrococcales, 2 species of 2 genera in the Propionibacteriales, 1 species of 1 genus in the Pseudonocardiales, 4 species of 2 genera in the Streptomycetales, 2 species of 2 genera in the Streptosporangiales and 1 species of 1 genus in the Solirubrobacterales. Gram reaction, cell and colony morphology, pigmentation, physiological characteristics, isolation sources and strain IDs are described in the section of species description.