• Title/Summary/Keyword: base sequence

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Cloning and Base Sequence Determination of Replication Initiation Gene (rep) Isolated from Staphylococcus aureus DH1 R-plasmid pSBK203 (Staphylococcus aureus DH1에서 분리된 R-plasmid pSBK203의 복제 개시 유전자(rep) 분리 및 염기서열 결정)

  • Park, Seung-Moon;Kwon, Dong-Hyun;Byeon, Woo-Hyeon
    • Korean Journal of Microbiology
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    • v.31 no.1
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    • pp.44-47
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    • 1993
  • A replication initiation gene was identified and its nucleotide sequence has been determined from a 3.8 kb, chloramphenicol acethyltransferase conferring R-plasmid pSBK203 of Staphylococcus aures. Location of the replication related region of pSBK 203 was determined by interuption with pUC 119 at XBaI and MspI sites which resulted in inactivation of replication in Bacilius subtilis. Base sequence of this region revealed on open reading frame of 942 base pairs, which encoded a 314 amino acid protein. Base sequence homology with other rep of pT181 family plasmids such as pT181, pC221, pC223, pS194, pU112, and pCW7 was ranged from 78% to 97% and the predicted amino acid sequence homology was from 72% to 95%.

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ON THE LAST DIGIT AND THE LAST NON-ZERO DIGIT OF nn IN BASE b

  • Grau, Jose Maria;Oller-Marcen, Antonio M.
    • Bulletin of the Korean Mathematical Society
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    • v.51 no.5
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    • pp.1325-1337
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    • 2014
  • In this paper we study the sequences defined by the last and the last non-zero digits of $n^n$ in base b. For the sequence given by the last digits of $n^n$ in base b, we prove its periodicity using different techniques than those used by W. Sierpinski and R. Hampel. In the case of the sequence given by the last non-zero digits of $n^n$ in base b (which had been studied only for b = 10) we show the non-periodicity of the sequence when b is an odd prime power and when it is even and square-free. We also show that if $b=2^2{^s}$ the sequence is periodic and conjecture that this is the only such case.

Channel Assignment Sequence Optimization Under Fixed Channel Assignment Scheme (채널 고정 할당 방식 이동통신 시스템에서 채널 할당 순서 최적화)

  • Han, Jung-Hee
    • Journal of Information Technology Services
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    • v.9 no.2
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    • pp.163-177
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    • 2010
  • In this paper, we consider a channel ordering problem that seeks to maximize the service quality in mobile radio communication systems. If a base station receives a connection request from a mobile user, one of the empty channels belonging to the base station is assigned to the mobile user. In case multiple empty channels are available, we can choose one that incurs least interference with other channels assigned to adjacent base stations. However, note that a pair of channels that are not separated enough generates interference only if both channels are assigned to mobile users. That is, interference between channels may vary depending on the channel assignment sequence for each base station and on the distribution of mobile users. To find a channel assignment sequence that seems to generate minimum interference, we develop an optimization model considering various scenarios of mobile user distribution. Simulation results show that channel assignment sequence determined by the scenario based optimization model significantly reduces the interference provided that scenarios and interference cost are properly generated.

Periodic Binary Sequence Time Offset Calculation Based on Number Theoretic Approach for CDMA System (CDMA 시스템을 위한 정수론 접근 방법에 의한 주기이진부호의 사건?? 계산)

  • 한영열
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.19 no.5
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    • pp.952-958
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    • 1994
  • In this paper a method calculates the time offset between a binary sequence and its shifted sequence based on the number theoretic approach is presented. Using this method the time offset between a binary sequence and its shifted sequence can be calculated. It has been recongnized that the defining the reference (zero-offset) sequence is important in synchronous code division multiple access(CDMA) system since the same spreading sequence are used by the all base station. The time offset of the sequence with respect to the zero offset sequence are used to distinguish signal received at a mobile station from different base stations. This paper also discusses a method that defines the reference sequence.

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NMR Study on Thermal Stability of the Double Helical Structures of d(CGAATTCG)2, d(CGTATACG)2 and their berenil complexes

  • Kim, Eun-Hee;Hong, Seok-Joo;Huh, Sung-Ho
    • Journal of the Korean Magnetic Resonance Society
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    • v.8 no.2
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    • pp.96-107
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    • 2004
  • We prepared two oligonucleotides containing same base pairing, but different base sequence in the middle region, d(CGAATTCG) and d(CGTATACG). NMR and UV absorbance data represented that such variation in base sequence could cause a significant difference in melting temperature and dynamics between d(CGAATTCG)$_2$ and d(CGTATACG)$_2$ duplexes, which are regarded to be associated with the stacked structure and the width of the minor groove of them. The latter showed poor stability compared to the former, because of poor stacking of bases. And berenil could bind to the minor groove of d(CGAATTCG)$_2$ which is relatively narrow, more strongly than d(CGTATACG)$_2$ and this gave rise to large improvement in thermal stability of the d(CGAATTCG)$_2$ duplex, compared to d(CGTATACG)$_2$.

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A DENSITOMETRIC STUDY OF THE DENTAL FILMS IN COMBINATION WITH VARIABLE PROCESSING SOLUTIONS (현상법 현상액에 따른 필름특성에 관한 연구)

  • Kim Ho Cheol;Park Jae Kwan
    • Journal of Korean Academy of Oral and Maxillofacial Radiology
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    • v.17 no.1
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    • pp.197-207
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    • 1987
  • This study was undertaken to investigate the relationships between film and processing solution at different processing temperatures. Three kinds of periapical film were used for this study. They included EP-2l film, DF-58, and A film Each film was processed by automatic film processor with RD-Ⅲ X-dol 90, and A processing solutions at 68° 74° 80° 86° and 92°F. Film density was measured with the densitometer, and base plus fog density, film relative speed, film contrast, and subject contrast were evaluated. The following results were obtained; 1. As the processing temperature was increased, base plus density was increased. Inadequate base plus fog densities were obtained with three films in combination with three processing solutions at 92°F. 2. Lowest base plus fog densities were obtained with A film, followed in ascending order by EP-21, and DF-58 film in combination with A or RD-Ⅲ processing solutions. The sequence of base plus fog densities was in ascending order by EP-21, A, and DF-58 film in combination with X-dol 90 processing solution. 3. The sequence of film relative speed values was in ascending order of EP-21, A, and DF-58 film in combination with A and RD-Ⅲ processing solutions, respectively. 4. As the processing temperature was increased, film contrast values was increased. The sequence of film contrast values was in descending order solution. The sequence of film contrast values was in descending order of EP-2l, DF-58, and A film in combination with RD-Ⅲ, X-dol 90 processing solution at 80°F. 5. As the processing temperature was increased, subject contrast was increased. The sequence of subject contrast was in descending order of A, X-dol 90, and RD-Ⅲ processing solution in combination with three films at 80°F. The sequence of subject contrast was in descending order of EP-21, A, and DF-58 film in combination with A processing solution at different processing temperatures.

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Analogical Transfer: Sequence and Connection

  • LIM, Mi-Ra
    • Educational Technology International
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    • v.9 no.1
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    • pp.79-96
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    • 2008
  • The issue of connection between entities has a lengthy history in educational research, especially since it provides the necessary bridge between base and target in analogical transfer. Recently, the connection has been viewed through the application of technology to bridge between sequences in order to be cognitively useful. This study reports the effect of sequence type (AT vs. TA) and connection type (fading vs. popping) on the achievement and analogical transfer in a multimedia application. In the current research, 10th -grade and 11th -grade biology students in Korea were randomly assigned to five groups to test the effects of presentation sequence and entity connection type on analogical transfer. Consistent with previous studies, sequence type has a significant effect: analogical transfer performance was better when base representations were presented first followed by target representations rather than the reverse order. This is probably because presenting a familiar base first helps in understanding a less familiar target. However, no fully significant differences were found with the entity connection types (fading vs. popping) in analogical transfer. According to the Markman and Gentner's (2005) spatial model, analogy in a space is influenced only by the differences between concepts, not by distance in space. Thus connection types fail on the basis of this spatial model in analogical transfer test. The findings and their implications for sequence and connection research and practice are discussed. Leveraging on the analogical learning process, specific implications for scaffolding learning processes and the development of adaptive expertise are drawn.

Channel Assignment Sequence Optimization under Fixed Channel Assignment Scheme (채널 고정 할당 방식에서 채널 할당 순서 최적화(응용 부문))

  • Han, Jung-Hee;Lee, Young-Ho;Kim, Seong-In;Kim, Yong-Jin
    • Proceedings of the Korean Operations and Management Science Society Conference
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    • 2006.11a
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    • pp.288-300
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    • 2006
  • In this paper, we consider a channel ordering problem that seeks to minimize the total interference in mobile radio networks. If a base station receives connection request from a mobile user, one of the empty channels that are fixed to the base station is assigned to the mobile user. Among several channels available, we can choose one that seems to make least interference with other channels assigned to adjacent base stations. However, a pair of channels that are not separated enough do not generate interference if both of them are not simultaneously used by mobile users. That is, interference between channels may vary depending on the channel assignment sequence for each base station and on the distribution of mobile users. To find a channel assignment sequence that seems to generate minimum interference, we develop an optimization model considering various scenarios of mobile user distribution. Simulation results show that channel assignment sequence determined by the scenario based optimization model significantly reduces the interference provided that scenarios and interference costs are properly generated.

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A Novel Calibration Method Using Zadoff-Chu Sequence and Its FPGA Implementation (Zadoff-Chu sequence를 이용한 실시간 Calibration 알고리즘과 FPGA 구현)

  • Jang, Jae Hyun;Sun, Tiefeng;Yang, Hyun Wook;Choi, Seung Won
    • Journal of Korea Society of Digital Industry and Information Management
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    • v.9 no.3
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    • pp.59-65
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    • 2013
  • This paper presents a novel calibration method for a base station system adopting an antenna array. The proposed technique utilizes Zadoff-Chu sequence, which is included in the LTE pilot signal periodically, in order to compute the phase characteristic of each antenna channel. As the Zadoff-Chu sequence exhibits an excellent autocorrelation characteristic, it is possible for the receiving base station to retrieve the Zadoff-Chu sequence transmitted from each mobile terminal. In addition, we can obtain the phase characteristic of each antenna channel, which is the ultimate goal of the calibration procedure. The proposed calibration algorithm has been implemented using an FPGA (Field Programmable Gate Array). We have applied the proposed algorithm to an array consisting of 2 antenna elements for simplicity. the phase value implied to the first and second antenna path is very accurately calculated from the proposed procedure. From the experimental test, the proposed method provides accurate calibration results.

Sequence Alignment Algorithm using Quality Information (품질 정보를 이용한 서열 배치 알고리즘)

  • Na, Joong-Chae;Roh, Kang-Ho;Park, Kun-Soo
    • Journal of KIISE:Computer Systems and Theory
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    • v.32 no.11_12
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    • pp.578-586
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    • 2005
  • In this Paper we consider the problem of sequence alignment with quality scores. DNA sequences produced by a base-calling program (as part of sequencing) have quality scores which represent the confidence level for individual bases. However, previous sequence alignment algorithms do not consider such quality scores. To solve sequence alignment with quality scores, we propose a measure of an alignment of two sequences with orality scores. We show that an optimal alignment in this measure can be found by dynamic programming.