• Title/Summary/Keyword: biotype

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Molecular Typing of Acinetobacter Baumannii Strains by Randomly Amplified Polymorphic DNA (RAPD) Analysis (Randomly Amplified Polymorphic DNA (RAPD) 분석에 의한 Acinetobacter Baumannii 균주의 유전형 분류)

  • Oh, Jae-Young;Cho, Jae-Wee;Park, Jong-Chun;Lee, Je-Chul
    • The Journal of the Korean Society for Microbiology
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    • v.35 no.2
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    • pp.129-139
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    • 2000
  • Acinetobacter baumannii strains are emerging pathogens of the nosocomial infection with an increasing frequency in recent years. The therapeutic difficulty due to the wide spread of multiple resistant strains was major problem in A. baumannii infection. It seems likely that high frequency of A. baumannii infection will be increasing epidemiological importance in the future. However, the current limited understanding of the epidemiology of A. baumannii infections is caused by lack of a rapid and practical method for the molecular characterization of A. baumannii strains. This study was undertaken to determine molecular types and genetic similarity among A. baumannii strains isolated from four hospitals by RAPD analysis. Eighty-five strains, including 40 from Chunnam University Hospital, 27 from Dankook University Hospital, 15 from Yonsei University Hospital, and 3 from Seonam University Hospital, were classified into three molecular types. Molecular type II was the most common pattern and included 72 strains. All strains from Dankook University Hospital and 40 strains from Chunnam University Hospital belonged to molecular type I or II. A. baumannii strains form Yonsei University Hospital were very distant similarity values. The range of genetic similarity values among 85 strains of A. baumannii was 0.26 to 1.00. Although phenotypes including biotype and antimicrobial resistance pattern of A. baumannii strains were same or very similar to each other, their RAPD patterns were quite different. Typing with phenotypes was found to be less reliable than molecular typing by RAPD analysis. These results suggest that RAPD analysis provides rapid and simple typing method of A. baumannii strains for epidemiological studies. This work is the first epidemiological report of A. baumannii infections in Korea and it is hoped that results of this work may contribute to a better understanding of the clinical importance and epidemiology of A. baumannii strains.

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Begomoviruses and Their Emerging Threats in South Korea: A Review

  • Khan, Mohammad Sajid;Ji, Sang-He;Chun, Se-Chul
    • The Plant Pathology Journal
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    • v.28 no.2
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    • pp.123-136
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    • 2012
  • Diseases caused by begomoviruses (family Geminiviridae, genus Begomovirus) constitute a serious constraint to tropical and sub-tropical agro-ecosystems worldwide. In recent years, they have also introduced in temperate regions of the world where they have great impact and are posing a serious threat to a variety of greenhouse crops. Begomoviral diseases can in extreme cases reduce yields to zero leading to catastrophic losses in agriculture. They are still evolving and pose a serious threat to sustainable agriculture across the world, particularly in tropics and sub-tropics. Till recently, there have been no records on the occurrence of begomoviral disease in South Korea, however, the etiology of other plant viral diseases are known since last century. The first begomovirus infected sample was collected from sweet potato plant in 2003 and since then there has been gradual increase in the begomoviral epidemics specially in tomato and sweet potato crops. So far, 48 begomovirus sequences originating from various plant species have been submitted in public sequence data base from different parts of the country. The rapid emergence of begomoviral epidemics might be with some of the factors like evolution of new variants of the viruses, appearance of efficient vectors, changing cropping systems, introduction of susceptible plant varieties, increase in global trade in agricultural products, intercontinental transportation networks, and changes in global climatic conditions. Another concern might be the emergence of a begomovirus complex and satellite DNA molecules. Thorough understanding of the pathosystems is needed for the designing of effective managements. Efforts should also be made towards the integration of the resistant genes for the development of transgenic plants specially tomato and sweet potato as they have been found to be widely infected in South Korea. There should be efficient surveillance for emergence or incursions of other begomoviruses and biotypes of whitefly. This review discusses the general characteristics of begomoviruses, transmission by their vector B. tabaci with an especial emphasis on the occurrence and distribution of begomoviruses in South Korea, and control measures that must be addressed in order to develop more sustainable management strategies.

A STUDY ON THE ISOLATION AND SEROTYPING OF STREPTOCOCCUS MUTANS FROM DENTAL PLAQUE OF CARIOUS LESION (치아우식증(齒牙齲蝕症)의 환자(患者)의 우식이환부(齲蝕罹患部) 치태(齒苔)로 부터 Streptococcus mutans의 분리(分離)와 혈청형(血淸型)에 관(關)한 연구(硏究))

  • Lee, Chae-Dong;Choi, Ho-Young;Park, Sang-Jin
    • Restorative Dentistry and Endodontics
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    • v.8 no.1
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    • pp.31-44
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    • 1982
  • Streptococcus mutans strains were isolated from dental plaques of carious lesions of 53 patients on mitis-salivarius-bacitracin (MSB) and mitis-salivarius(MS) medium as a supplement. The epidemiological investigation was carried out to determine the biotypes and serotypes of S. mutans isolates. For the serotyping, autoclaved extract antigens from the isolates and serotype-specific antisera against seven known serotypes of S. mutans were prepared. The serotypes of the isolates were demonstrated in immunodiffusion test. In addtition, the prevalence of ${\beta}$-hemolysis on 5% sheep blood agar plate in restricted anaerobic condition and yellow pigment production on 5% sucrose agar plate in less anaerobic condition among the isolates were investigated. The results were as follows: 1. Forty-eight S. mutans strains were isolated from dental plaque samples of 33 patients (62.3%) among 53 patients. 2. Of the isolates, some strains were not grown on MSB medium. 3. Serotype c S. mutans was found in 60.6%, serotype d was found in 30.3% of the patients who were known to harbor S. mutans. 4. Of. the isolates, serotype c isolates were most prevalent (43.8%), serotype d isolates were 25.0%, and serotype b, e, f and g isolates were also found but in lower frequencies. Serotype a S. mutans were not detected. 5. The correlation between serotype and biotype of the isolates was found in 78.6% of the typing cases. 6. Strains revealed ${\beta}$-hemolysis were in 52.1% of the isolates, strains produced yellow pigment were in 47.9% of the isolates, and with one exception, all the strains were belong to serotype c, e and f. 7. The majority of the isolates which revealed ${\beta}$-hemolysis appeared to be yellow pigmented, these isolates were belong to serotype c, e and f.

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Distribution Pattern of the Naturalized Plants in the Biotope Types in the Jeonju Area (전주지역 비오톱 유형별 귀화식물의 분포특성)

  • Oh, Choong-Hyeon;Choi, Il-Ki;Lee, Eun-Heui;Lim, Dong-Ok
    • Korean Journal of Environment and Ecology
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    • v.24 no.1
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    • pp.37-45
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    • 2010
  • This study was conducted to provide a database for biotope conservation and restoration of the Jeonju region in North Cheolla Province. To accomplish this task, investigations were made on the characteristics of the distribution pattern of naturalized plants in the region. From May to June 2008, the flora and lists of naturalized plants were investigated and, based on these data the ratio of naturalization was calculated. The results of this investigation areas follows: a total of 113 families and 54 species were found in the flora. The naturalized plants among them amounted to 19 families and 54 species. The ratio of naturalization was most high in the biotope type of rural dried stream(36.4%). The biotype that showed the lowest ratio of naturalization was coniferous natural forest type, which had no naturalized plants in it. The average naturalization ration of the Jeonju region turned out to be 18.9%, which is similar to that of other mid-size cities in Korea.

Socket preservation using eggshell-derived nanohydroxyapatite with platelet-rich fibrin as a barrier membrane: a new technique

  • Kattimani, Vivekanand Sabanna;Lingamaneni, Krishna Prasad;Kreedapathi, Girija Easwaradas;Kattappagari, Kiran Kumar
    • Journal of the Korean Association of Oral and Maxillofacial Surgeons
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    • v.45 no.6
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    • pp.332-342
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    • 2019
  • Objectives: Socket grafting is vital to prevent bone resorption after tooth extraction. Several techniques to prevent resorption have been described, and various bone graft substitutes have been developed and used with varying success. We conducted this pilot study to evaluate the performance of nanohydroxyapatite (nHA) derived from chicken eggshells in socket preservation. Materials and Methods: This was a prospective, single center, outcome assessor-blinded evaluation of 23 sockets (11 patients) grafted with nHA and covered with platelet-rich fibrin (PRF) membrane as a barrier. Bone width and radiographic bone density were measured using digital radiographs at 1, 12, and 24 weeks post-procedure. Postoperative histomorphometric and micro-computed tomography (CT) evaluation were performed. The study protocol was approved by the Institutional Ethics Committee. Results: All patients had uneventful wound healing without graft material displacement or leaching despite partial exposure of the grafted socket. Tissue re-epithelialized with thick gingival biotype (>3 mm). Width of the bone was maintained and radiographic density increased significantly with a trabecular pattern (73.91% of sockets) within 12 weeks. Histomorphometric analysis showed 56.52% Grade 3 bone formation and micro-CT analysis revealed newly formed bone with interconnecting trabeculae. Conclusion: Use of a PRF membrane with nHA resulted in good bone regeneration in sockets. Use of a PRF membrane prevents periosteal-releasing incisions for primary closure, thereby facilitating the preservation of keratinized mucosa and gingival architecture. This technique, which uses eggshell-derived nHA and PRF membrane from the patient's own blood, is innovative and is free of disease transfer risks. nHA is a promising economic bone graft substitute for bone regeneration and reconstruction because of the abundant availability of eggshell waste as a raw material.

Expression of the TaCR1 Gene Induced by Hessian Fly Larval Infestation in Wheat Carrying a H21 Gene.

  • Jang, Cheol-Seong;Seo, Yong-Weon
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.49 no.2
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    • pp.148-153
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    • 2004
  • The Hessian fly, Mayetiola destructor (Say), is known to be one of the major insect herbivores of wheat worldwide. In order to provide molecular events on interactions of the NIL with H21 and larvae of Hessian fly biotype L, the TaCR1 gene, Triticum aestivum cytokinin repressed 1, was isolated through the suppression subtractive hybridization, which was constructed using stems of the NIL with H21 at 6 days after infestation as tester and stems of the recurrent parent Coker797 without H21 at 6 days after infestation as driver. Transcript levels of TaCR1 mRNA in the NIL with H21 were highest at 6 days after infestation but in the Coker797 without H21 until 8 days were similar with those of non-infested plants. Expression of the TaCR1 gene was decreased at early time and then recovered after wounding or $H_2O$$_2$ treatment as well as 6-BAP treatment. Transcripts levels of the TaCR1 gene was changed after MeJA, SA, ethephone, or ABA treatment. In drought treatment, the TaCRl gene were increased at early stage of stress and then decreased at late stage. Expression of the TaCRl gene was continued to decrease through 24 h in the cold treatment. Although the TaCRl gene is increased through infestation in NIL with H21, further study was required to elucidate a role on resistance against larvae of Hessian fly. However, the TaCR1 gene could be used as marker gene on response of plants against abiotic stresses as well as application of plants with several hormones.

Recent Development of Rapid and Automation Technology for Food Microbiological Examination

  • Hiroshi Kurata
    • Proceedings of the Korean Society of Food Hygiene and Safety Conference
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    • 1996.06a
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    • pp.33-33
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    • 1996
  • Interests in the field of rapid methods and automation in microbiology have been growing steadily on an international scale in recent years. International meetings concerned this problem have been held in elsewhere in the world countries since the past twenty years. But, unfortunately in the field of microbial examination in food hygiene, this problem have not yet been developed so much as in the field of clinical microbiology. Today, I would like to introduce you here present aspects of rapid and automation technologies, those which are manly carrying in milk and meats industries. My illustration will be given recent improved technologies using automatic apparatus and instruments along with process of microbial count procedure. Recent direct microbiological counting system (ChemeScan \ulcorner) as real time ultrasensitive analysis created by Cheminex Ltd., France is now most evolutional instrument to provide direct microbial counts, down to one cell, within 30 minutes. The results from these evaluations how a good correlation between the ChemScan system and the standard plate count method. This system will be successful application for not only in the field of pharmacology but also food microbiology. In addition, current identification of microbes by sophisticated instruments suitable for food microbiology, one of which Biology is manual system (BIOLOG\ulcorner), provides reference-level capability at a modes price. For the manual system, the color reactions in the microplate are read by eye and manually keyed into personal computer. Species identification appears on the computer screen within seconds, along with biotype patterns, a list of closely related species, and other useful statistics. In present this is useful application for microbial ecology and epidemiological survey. RiboPrinter system newly produced by DuPont is now focusing among microbiologists in the world, and is one of the biggest microbial characterization system using a DNA-based approach. The technology analyzer is bacterial culture for its genetic fingerprint or riboprint pattern. Finally Bio-cellTracer system for automatic measurement of fungal growth and Fukitori-Maseter, a Surface Hygiene Monitoring Kit by using swabe procedure in food processing environment are briefly illustrated in this presentation.

Current status and agronomic aspects of herbicide resistance in Korea

  • Bo, Aung Bo;Jeong, In Ho;Won, Ok Jae;Jia, WeiQiang;Yun, Hye Jin;Khaitov, Botir;Le, Thi Hien;Umurzokov, Mirjalol;Ruziev, Farrukh;Lim, Min Ju;Cho, Kwang Min;Park, Kee Woong;Lee, Jeung Joo
    • Korean Journal of Agricultural Science
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    • v.46 no.2
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    • pp.405-416
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    • 2019
  • Weeds are a serious problem in crop production. Use of synthetic herbicides is rapidly increasing in weed management worldwide including Korea. Herbicide application reduces the time spent on weed control. However, the evolution of resistance to herbicides in weeds has become widespread as a natural response to selection pressure imposed by agricultural management activities. If an herbicide with the same mechanisms of action is used repeatedly and intensively, it can rapidly select for a weed biotype that shifts toward difficult-to-control becoming a more tolerant weed and lead to the evolution of herbicideresistant weeds. Moreover, agricultural and biological factors have an important role in the development of herbicide-resistant weed populations. Mitigating the evolution of herbicide resistance in weeds relies on reducing selection through the diversification of weed control techniques. The resistance management of weeds in the future will strongly depend on intensive cropping systems. The current situation of intensive cropping systems with their heavy reliance on the efficacy of chemical weed control will not lead to significant containment of this problem. Therefore, management strategies need to overcome the further spread of herbicide resistance in weeds in Korean crop production. This review presents the current information on herbicide resistance in Korea and factors controlling the development of herbicide resistant weeds.

Effects of Pseudomonas Fluorescens, KR-164 on Plant Pathogenic Microorganisms (식물(植物) 병원성(病源性) 미생물(微生物)에 미치는 Pseudomonas fluorescens, KR-164의 영향(影響))

  • Rhee, Young-Hwan;Kim, Yeong-Yil;Lee, Jae-Pyeong;Kim, Yong-Wong;Kim, Yong-Jae;Lee, Jae-Wha
    • Korean Journal of Soil Science and Fertilizer
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    • v.23 no.1
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    • pp.53-59
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    • 1990
  • The antagonistic fluorescent pseudomonas, which was isolated from continuous cropping rhizosphere of pepper and cucumber, was identified as Pseudomonas fluorescens (P.f.). For further study, transformant was derived from the isolated P.f. after spontaneous mutation to give antibiotic resistance to nalidixic acid and rifampicin as marked strain. Both P.f. and transformant strains were used for this study and the results obtained were summarized as follows. 1. One of the most effective antagonistic strain, KR164, was selected against F. solani, F. oxysporum, R. solani and this strain was identified and classified as Pseudomonas fluorescens biotype IV. 2. Transformant, KR1641, was derived from strain KR164 and both strains had the same biological and biochemical characteristics. 3, Mycelial lysis and abnormal mycelia of plant pathogenic fungi were microscopically observed after simultaneous culture of fungus and given bacterial strain. 4. The length of chinese cabbage to the autolyzed became longer with given bacterial strain in dark culture. 5. Percentage of germination, number of leaves, length of height, and length of root in chinese cabbage in pot experiment were improved by inoculation of given bacterial strain. 6. The number of given bacterial strain kept generally stable until 34 days after inoculation of itself in pot experiment. Inoculation of given bacterial strain did affect the number of plant disease fungi to be decreased but did not affect the number of other bacteria, Bacillus, in pot experiment.

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Effect of Temperature and Host Plant on Development and Reproduction of the Sweetpotato Whitefly, Bemisia tabaci(Homoptera:Aleyrodidae) (담배가루이의 발육과 생식에 미치는 온도와 기주의 영향)

  • 안기수;이기열;최미현;김정화;김기하
    • Korean journal of applied entomology
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    • v.40 no.3
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    • pp.203-209
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    • 2001
  • Development and reproduction of the sweetpotato whitefly, Bemisia tabaci(B biotype) were investigated under different temperatures and host plants. Developmental periods from egg to pre-adult of whiteflies measured under four constant temperatures: they were 86.2 days at $15^{\circ}C$ and 17.0 days at $30^{\circ}C$. Lower threshold temperature and total effective temperature for the development of egg and nymph, and for the complete development (egg to emergence) were $10.1,\;11.6,\;11.1^{\circ}C$ and 110.3, 204.7, 317.3 degree days, respectively. The hatching and emergence rates were 87.0% at $25^{\circ}C$ and 76.7% at $20^{\circ}C$, which were higher than the results of other temperatures. The adult longevity was 23.6 and 14.0 days at $20^{\circ}C$ and $30^{\circ}C$, respectively. The highest average fecundity per female was 103.3 at $25^{\circ}C$. But there were no significant differences among the temperatures. The highest intrinsic rate of natural increase($r_{m}$) was 0.196 at $30^{\circ}C$ and the highest net reproduction rate ($R_{o}$) was 97.33 at $25^{\circ}C$. Developmental periods from egg to pre-adult of whiteflies were 21.2 on the tomato, 28.1 on red pepper, 22.2 on eggplant and 25.5 days on poinsetia. The hatching was highest (90.3%) on red paper and emergence rate was highest (89.6%) on eggplant. The longest longevity of adult female was 26.5 days on eggplant, and the average fecundity per female was greater on tomato and eggplant than on other host plants. The intrinsic rate of natural increase($r_{m}$) was the highest on tomato as 0.165 and the net reproduction rate ($R_{o}$) was the highest on eggplant as 106.1. As a result, the optimum range of temperature for the growth of B. tabaci was between $25^{\circ}C$ and $30^{\circ}C$, and the optimum host plant were tomato and eggplant among the plants tested.

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