• Title/Summary/Keyword: brain region extraction

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Brain Extraction of MR Images

  • Du, Ruoyu;Lee, Hyo Jong
    • Proceedings of the Korea Information Processing Society Conference
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    • 2010.04a
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    • pp.455-458
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    • 2010
  • Extracting the brain from magnetic resonance imaging head scans is an essential preprocessing step of which the accuracy greatly affects subsequent image analysis. The currently popular Brain Extraction Tool produces a brain mask which may be too smooth for practical use to reduce the accuracy. This paper presents a novel and indirect brain extraction method based on non-brain tissue segmentation. Based on ITK, the proposed method allows a non-brain contour by using region growing to match with the original image naturally and extract the brain tissue. Experiments on two set of MRI data and 2D brain image in horizontal plane and 3D brain model indicate successful extraction of brain tissue from a head.

The Brain Region Extraction Using Cellular Automata (셀룰러 오토마타를 이용한 뇌 영역 추출에 관한 연구)

  • 이승용;허창우;류광렬
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • 2003.10a
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    • pp.247-250
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    • 2003
  • This paper describes the extraction method for brain region using cellular automata from the brain MR image. In the first removing the background from the brain MR image, and then extracting the brain region by applying the cellular automata rule obtained from histogram analysis information. The results on some experimental results showed that the PSNR is 42.11(dB) on image quality and also the correlation factor is estimated 98.46%. The result of this study can be used as the auto-diagnostics system.

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Automated Brain Region Extraction Method in Head MR Image Sets (머리 MR영상에서 자동화된 뇌영역 추출)

  • Cho, Dong-Uk;Kim, Tae-Woo;Shin, Seung-Soo
    • The Journal of the Korea Contents Association
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    • v.2 no.3
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    • pp.1-15
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    • 2002
  • A noel automated brain region extraction method in single channel MR images for visualization and analysis of a human brain is presented. The method generates a volume of brain masks by automatic thresholding using a dual curve fitting technique and by 3D morphological operations. The dual curve fitting can reduce an error in clue fitting to the histogram of MR images. The 3D morphological operations, including erosion, labeling of connected-components, max-feature operation, and dilation, are applied to the cubic volume of masks reconstructed from the thresholded Drain masks. This method can automatically extract a brain region in any displayed type of sequences, including extreme slices, of SPGR, T1-, T2-, and PD-weighted MR image data sets which are not required to contain the entire brain. In the experiments, the algorithm was applied to 20 sets of MR images and showed over 0.97 of similarity index in comparison with manual drawing.

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Extraction of Brain Boundary and Direct Volume Rendering of MRI Human Head Data (MR머리 영상의 뇌 경계선 추출 및 디렉트 볼륨 렌더링)

  • Song, Ju-Whan;Gwun, Ou-Bong;Lee, Kun
    • Journal of KIISE:Computing Practices and Letters
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    • v.8 no.6
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    • pp.705-716
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    • 2002
  • This paper proposes a method which visualizes MRI head data in 3 dimensions with direct volume rendering. Though surface rendering is usually used for MRI data visualization, it has some limits of displaying little speckles because it loses the information of the speckles in the surfaces while acquiring the information. Direct volume rendering has ability of displaying little speckles, but it doesn't treat MRI data because of the data features of MRI. In this paper, we try to visualize MRI head data in 3 dimensions as follows. First, we separate the brain region from the head region of MRI head data, next increase the pixel level of the brain region, then combine the brain region with the increased pixel level and the head region without brain region, last visualizes the combined MRI head data with direct volume rendering. We segment the brain region from head region based on histogram threshold, morphology operations and snakes algorithm. The proposed segmentation method shows 91~95% similarity with a hand segmentation. The method rather clearly visualizes the organs of the head in 3 dimensions.

Discriminative Power Feature Selection Method for Motor Imagery EEG Classification in Brain Computer Interface Systems

  • Yu, XinYang;Park, Seung-Min;Ko, Kwang-Eun;Sim, Kwee-Bo
    • International Journal of Fuzzy Logic and Intelligent Systems
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    • v.13 no.1
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    • pp.12-18
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    • 2013
  • Motor imagery classification in electroencephalography (EEG)-based brain-computer interface (BCI) systems is an important research area. To simplify the complexity of the classification, selected power bands and electrode channels have been widely used to extract and select features from raw EEG signals, but there is still a loss in classification accuracy in the state-of- the-art approaches. To solve this problem, we propose a discriminative feature extraction algorithm based on power bands with principle component analysis (PCA). First, the raw EEG signals from the motor cortex area were filtered using a bandpass filter with ${\mu}$ and ${\beta}$ bands. This research considered the power bands within a 0.4 second epoch to select the optimal feature space region. Next, the total feature dimensions were reduced by PCA and transformed into a final feature vector set. The selected features were classified by applying a support vector machine (SVM). The proposed method was compared with a state-of-art power band feature and shown to improve classification accuracy.

Development of Real-Time Face Region Recognition System for City-Security CCTV (도심방범용 CCTV를 위한 실시간 얼굴 영역 인식 시스템)

  • Kim, Young-Ho;Kim, Jin-Hong
    • Journal of Korea Multimedia Society
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    • v.13 no.4
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    • pp.504-511
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    • 2010
  • In this paper, we propose the face region recognition system for City-Security CCTV(Closed Circuit Television) using hippocampal neural network which is modelling of human brain's hippocampus. This system is composed of feature extraction, learning and recognition part. The feature extraction part is constructed using PCA(Principal Component Analysis) and LDA(Linear Discriminants Analysis). In the learning part, it can label the features of the image-data which are inputted according to the order of hippocampal neuron structure to reaction-pattern according to the adjustment of a good impression in a dentate gyrus and remove the noise through the auto-associative memory in the CA3 region. In the CA1 region receiving the information of the CA3, it can make long-term memory learned by neuron. Experiments confirm the each recognition rate, that are shape change and light change. The experimental results show that we can compare a feature extraction and learning method proposed in this paper of any other methods, and we can confirm that the proposed method is superior to existing methods.

Development of Learning Algorithm using Brain Modeling of Hippocampus for Face Recognition (얼굴인식을 위한 해마의 뇌모델링 학습 알고리즘 개발)

  • Oh, Sun-Moon;Kang, Dae-Seong
    • Journal of the Institute of Electronics Engineers of Korea SP
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    • v.42 no.5 s.305
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    • pp.55-62
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    • 2005
  • In this paper, we propose the face recognition system using HNMA(Hippocampal Neuron Modeling Algorithm) which can remodel the cerebral cortex and hippocampal neuron as a principle of a man's brain in engineering, then it can learn the feature-vector of the face images very fast and construct the optimized feature each image. The system is composed of two parts. One is feature-extraction and the other is teaming and recognition. In the feature extraction part, it can construct good-classified features applying PCA(Principal Component Analysis) and LDA(Linear Discriminants Analysis) in order. In the learning part, it cm table the features of the image data which are inputted according to the order of hippocampal neuron structure to reaction-pattern according to the adjustment of a good impression in the dentate gyrus region and remove the noise through the associate memory in the CA3 region. In the CA1 region receiving the information of the CA3, it can make long-term memory learned by neuron. Experiments confirm the each recognition rate, that are face changes, pose changes and low quality image. The experimental results show that we can compare a feature extraction and learning method proposed in this paper of any other methods, and we can confirm that the proposed method is superior to existing methods.

A 6-YEAR RETROSPECTIVE STUDY ABOUT CYSTS IN THE ORAL AND MAXILLOFACIAL REGION (구강악안면영역의 낭종에 대한 6년간의 후향적 임상 연구)

  • Choi, Guen-Ho;Jang, Jung-Rok;Park, Young-Jun;Moon, Hyea-Won;Kim, Young-Joon;Yu, Min-Gi;Kook, Min-Suk;Park, Hong-Ju;Ryu, Sun-Youl;Oh, Hee-Kyun
    • Maxillofacial Plastic and Reconstructive Surgery
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    • v.31 no.5
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    • pp.401-407
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    • 2009
  • Purpose : This study was designed to evaluate the clinical aspect of cysts which arised in the oral and maxillofacial region. Patients and Methods : We reviewed clinical record, radiograph, histopathologic and operative report of 155 patients who had been diagnosed as cysts and treated at the department of oral and maxillofacial surgery in Chonnam National University Hospital from January 2003 to December 2008. Gender, age, classifiaction, anatomic distribution, clinical sign and symptoms, treatment, complications and recurrence rate were studied. Results : 1. Among 155 patients, the male patients(64.5%) were more than the female(35.5%). 2. The average age ofthe patients was 37.2 years(ranging from 5 to 79 years). 3. In pathologic classification, radicular cyst and dentigerous cyst were most common cysts, irrespective of 73 cases(48.3%) and 35 cases(23.2%). 4. The frequently involved cystic regions were followed as mandibular molars(38.1%), and maxillary incisors(30.2%). 5. The frequent sequence of clinical symptoms was edema(29.9%), no symptom(18.9%), tenderness(13.9%), pain(11.5%) and abscess(9.4%). 6. The most prevalent treatment was the combination operation, such as cyst enucleation with extraction or endodontic treatment of the causative tooth(76.8%) 7. Among 155 cases, 2 cases that were treated using enucleation method were recurred(1.3%).

Three Dimensional Segmentation in PCNN

  • Nishi, Naoya;Tanaka, Masaru;Kurita, Takio
    • Proceedings of the IEEK Conference
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    • 2002.07b
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    • pp.802-805
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    • 2002
  • In the three-dimensional domain image expressed with two-dimensional slice images, such as fMRI images and multi-slice CT images, we propose the three-dimensional domain automatic segmentation for the purpose of extracting region. In this paper, we segmented each domain from the fMRI images of the head of people and monkey. We used the neural network "Pulse-Coupled Neural Network" which is one of the models of visual cortex of the brain based on the knowledge from neurophysiology as the technique. By using this technique, we can segment the region without any learning. Then, we reported the result of division of each domain and extraction to the fMRI slice images of human's head using "three-dimensional Pulse-Coupled Neural Network" which is arranged and created the neuron in the shape of a three-dimensional lattice.

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A Multicellular Spheroid Formation and Extraction Chip Using Removable Cell Trapping Barriers (한시적 세포포집 구조물을 이용한 다세포 스페로이드 형성 및 추출칩)

  • Jin, Hye-Jin;Kim, Tae-Yoon;Cho, Young-Ho;Gu, Jin-Mo;Kim, Jhin-Gook;Oh, Yong-Soo
    • Transactions of the Korean Society of Mechanical Engineers A
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    • v.35 no.2
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    • pp.131-134
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    • 2011
  • We propose a spheroid chip that uses removable cell trapping barriers and that is capable of forming and extracting multicellular spheroids. By using a conventional well plate and flask, it is difficult to form small-sized spheroids, which resemble avascular 3D cell-cell interaction. It was difficult to extract spheroids using conventional microchips and fixed cell trapping barriers. The proposed chip, however, facilitates both formation and extraction of spheroids by using removable cell trapping barriers formed by membrane deflection. The cell trapping barriers, formed at the membrane pressure of 50 kPa, hold the cells in the trapping region at a cell inlet pressure of 145.155 Pa. After incubation for 24 h, the trapped cells form uniform spheroids. We successfully extract the spheroids at a cell inlet pressure of 5 kPa after removing the membrane pressure. The extracted spheroids have a diameter of $197.2{\pm}11.7Bm$ with a viability of $80.3{\pm}7.7%$. Using the proposed chip, uniform spheroids can be formed and these spheroids can be safely extracted for carrying out the post-processing of spheroids.