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생화학분자생물학회 (Korean Society for Biochemistry and Molecular Biology)
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Compositional Correlations in Canine Genome Reflects Similarity with Human Genes

  • Joy, Faustin (Department of Animal Genetics and Breeding, West Bengal University of Animal & Fishery Sciences) ;
  • Basak, Surajit (Bioinformatics Centre, Bose Institute) ;
  • Gupta, Sanjib Kumar (Bioinformatics Centre, Bose Institute) ;
  • Das, Pranab Jyoti (Department of Animal Genetics and Breeding, West Bengal University of Animal & Fishery Sciences) ;
  • Ghosh, Shankar Kumar (Department of Animal Genetics and Breeding, West Bengal University of Animal & Fishery Sciences) ;
  • Ghosh, Tapash Chandra (Bioinformatics Centre, Bose Institute)
  • 투고 : 2005.05.28
  • 심사 : 2006.01.17
  • 발행 : 2006.05.31
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초록

The base compositional correlations that hold among various coding and noncoding regions of the canine genome have been analysed. The distribution pattern of genes, on the basis of $GC_3$ composition, shows a wide range similar to that observed in human. However the occurrence of maximum number of genes was observed in the range of 65-75% of $GC_3$ composition. The correlation between the coding DNA sequences of canine with the different noncoding regions (introns and flanking regions) is found to be significant and in many cases the degree of correlation show similarity to human genome. We found that these correlations are not limited to the GC content alone, but is holding at the level of the frequency of individual bases as well. The present study suggests that canines ideally belong to the predicted 'general mammalian pattern' of genome composition along with human beings.

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참고문헌

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