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Genetic Analysis of Asian Chum Salmon Populations Based on Microsatellite DNA Variation

  • Yoon, Moon-Geun (Faculty of Marine Bioscience and Technology, Kangnung National University) ;
  • Abe, Syuiti (Laboratory of Breeding Science, Graduate School of Fisheries Sciences, Hokkaido University) ;
  • Jin, Deuk-Hee (Faculty of Marine Bioscience and Technology, Kangnung National University)
  • 발행 : 2007.12.31

초록

We examined the genetic variability of Asian chum salmon (Oncorhynchus keta) populations using nuclear microsatellite (ms) DNA analysis with four polymorphic loci (OKM4, OKM5, OKM7, and OKM8) in 397 individuals from nine populations, including one in Korea, seven in Japan, and one in Russia. The msDNA gene diversity was highest in the Japanese populations, suggesting greater genetic variation in the populations in Japan than in populations in Korea and Russia. The pairwise $F_{ST}$ estimates based on our msDNA data showed that the Korean population was genetically different from the Japanese and Russian populations, and there were higher $F_{ST}$ estimates between Hokkaido and Honshu populations than between other population pairs. A neighbor-joining tree showed that the Korean population was distinct from two other clusters, representing the populations in Honshu and the populations in Hokkaido and Russia. These results suggest that the observed population genetic patterns of Asian chum salmon might be influenced by low or restricted gene flow.

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참고문헌

  1. Abe, S., S. Sato, H. Kojima, J. Ando, H. Ando, R.L. Wilmot, L.W. Seeb, V. Efremov, L. Leclair, W. Bucholtz, D.H. Jin, M. Kaeriyama, S. Urawa and A. Urano. 2002. Development of molecular markers for genetic stock identification of chum salmon. Fish. Sci., 68, 353-356 https://doi.org/10.2331/fishsci.68.sup1_353
  2. Allendorf, F.W. and S.R. Phelps. 1980. Loss of genetic variation in a hatchery stock of cutthroat trout. Trans. Am. Fish. Soc., 109,537-543 https://doi.org/10.1577/1548-8659(1980)109<537:LOGVIA>2.0.CO;2
  3. Avise, J.C., J. Arnold, R. Martin Ball, E. Bermingham, T. Lamb, J.E. Neigel, C.A. Reeb and N.C. Saunders. 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annu. Rev. Ecol. Syst., 18, 489-522 https://doi.org/10.1146/annurev.es.18.110187.002421
  4. Beacham, T.D. and J.R. Candy. 2005. Microsatellite analysis and stock identification of Pacific salmon using Pacific Rim baseline. N. Pac. Anad. Fish Comm. Bull., 6, 48-49
  5. Beacham, T.D., C.C. Wood, R.E. Wither and K.M. Miller. 2000. Application of microsatellite DNA variation to estimation of stock composition and escapement of Skeena River sockeye salmon (Oncorhynchus nerka). N. Pac. Anad. Fish Comm. Bull., 2, 263-276
  6. Bruford, M.W. and R.K. Wayne. 1993. Microsatellites and their application to population genetic studies. Curr. Opin. Genet. Dev., 3, 939-943 https://doi.org/10.1016/0959-437X(93)90017-J
  7. Habicht, C.N., V. Varnavskaya, T. Azumaya, S. Urawa, R.L. Wilmot, C.M. Guthrie III and J.E. Seeb. 2005. Migration patterns of sockeye salmon in the Bering Sea discerned from stock composition estimates of fish captured during BASIS studies. N. Pac. Anad. Fish Comm. Bull., 6,41-43
  8. Kijima, A. and Y. Fujio. 1982. Correlation between geographic distance and genetic distance in populations of chum salmon Oncorhychus keta. Bull. Jap. Soc. Sci. Fish., 48, 1703-1709 https://doi.org/10.2331/suisan.48.1703
  9. Nei, M. 1987. Molecular Evolutionary Genetics. Columbia University Press, New York, USA
  10. Park, L.K., M.A. Brainard, D.A. Dightman and G.A. Winans. 1993. Low levels of intraspecific variation in the mitochondrial DNA of chum salmon (Oncorhynchus keta). Mol. Mar. Biol. Biotechnol., 2, 362-370
  11. Quinn, T.P. 2005. The Behavior and Ecology of Pacific Salmon and Trout. University of Washington Press, Seattle, USA
  12. Ryman, N. and L. Laikre. 1991. Effects of supportive breeding on the genetically effective population size. Conserv. Biol., 5, 325-329 https://doi.org/10.1111/j.1523-1739.1991.tb00144.x
  13. Saitou, N. and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425
  14. Sambrook, J., E.F. Fritsch and T Maniatis. 1989. Molecular Cloning. A Laboratory Manual, 2nd edition, Cold Spring Harbor Laboratory Press, New York, USA
  15. Sato, S., J. Ando, H. Ando, S. Urawa, A. Urano and S. Abe. 2001. Genetic variation among Japanese populations of chum salmon inferred from the nucleotide sequences of the mitochondrial DNA control region. Zool. Sci., 18, 99-106 https://doi.org/10.2108/zsj.18.99
  16. Sato, S., H. Kojima, J. Ando, H. Ando, R.L. Wilmot, L.W. Seeb, V. Efremov, L. LeClair, W. Buchholz, D.H. Jin, S. Urawa, M. Kaeriyama, A. Urano and S. Abe. 2004. Genetic population structure of chum salmon in the Pacific Rim inferred from mitochondrial DNA sequence variation. Environ. Biol. Fish., 69, 37-50 https://doi.org/10.1023/B:EBFI.0000022881.90237.aa
  17. Slatkin, M. and R.R. Hudson. 1991. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics, 129, 555-562
  18. Schneider, S., D. Roessli and L. Excoffier. 2000. Arlequin Version 2.000. University of Geneva, Geneva. Retrieved from http://lgb.unige.ch/arlequin/
  19. Scribner, K.T., J.R., Gust and R.L. Fields. 1996. Isolation and characterization of novel salmon microsatellite loci: cross-species amplification and population genetic applications. Can. J. Fish. Aquat. Sci., 53, 833-841 https://doi.org/10.1139/cjfas-53-4-833
  20. Taylor, E.B., T.D. Beacham and M. Kaeriyama. 1994. Population structure and identification of North Pacific Ocean chum salmon (Oncorhynchus keta) reveal by an analysis of minisatellite DNA variation. Can. J. Fish. Aquat. Sci., 51, 1430-1442 https://doi.org/10.1139/f94-143
  21. Wilson, A.C., R.L. Cann, S.M. Carr, M. George, U.B. Gyllensten, K. Helm-Btchowski, R.G. Higuchi, S.R. Palumbi, E.M. Prager, R.D. Sage and M. Stone-King. 1985. Mitochondrial DNA and two perspectives on evolutionary genetics. BioI. J. Linnean Soc., 26, 375400