Asian-Australasian Journal of Animal Sciences

Asian Australasian Association of Animal Production Societies (아세아태평양축산학회)
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mtDNA Diversity and Phylogenetic State of Korean Cattle Breed, Chikso

  • Kim, Jae-Hwan (Animal Genetic Resources Station, National Institute of Animal Science, RDA) ;
  • Byun, Mi Jeong (Animal Genetic Resources Station, National Institute of Animal Science, RDA) ;
  • Kim, Myung-Jick (Animal Genetic Resources Station, National Institute of Animal Science, RDA) ;
  • Suh, Sang Won (Animal Genetic Resources Station, National Institute of Animal Science, RDA) ;
  • Ko, Yeoung-Gyu (Animal Genetic Resources Station, National Institute of Animal Science, RDA) ;
  • Lee, Chang Woo (Gangwon Provincial Livestock Research Center) ;
  • Jung, Kyoung-Sub (Chungbuk Institute of Livestock and Veterinary Research) ;
  • Kim, Eun Sung (Jeonbuk Institute of Livestock and Veterinary Research) ;
  • Yu, Dae Jung (Jeonnam Agricultural Research and Extension Services) ;
  • Kim, Woo Hyun (Gyeongbuk Livestock Research Institute) ;
  • Choi, Seong-Bok (Animal Genetic Resources Station, National Institute of Animal Science, RDA)
  • Received : 2012.09.11
  • Accepted : 2012.10.11
  • Published : 2013.02.01
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Abstract

In order to analyze the genetic diversity and phylogenetic status of the Korean Chikso breed, we determined sequences of mtDNA cytochrome b (cyt b) gene and performed phylogenetic analysis using 239 individuals from 5 Chikso populations. Five non-synonymous mutations of a total of 15 polymorphic sites were identified among 239 cyt b coding sequences. Thirteen haplotypes were defined, and haplotype diversity was 0.4709 ranging from 0.2577 to 0.6114. Thirty-five haplotypes (C1-C35) were classified among 9 Asia and 3 European breeds. C2 was a major haplotype that contained 206 sequences (64.6%) from all breeds used. C3-C13 haplotypes were Chikso-specific haplotypes. C1 and C2 haplotypes contained 80.5% of cyt b sequences of Hanwoo, Yanbian, Zaosheng and JB breeds. In phylogenetic analyses, the Chikso breed was contained into B. taurus lineage and was genetically more closely related to two Chinese breeds than to Korean brown cattle, Hanwoo. These results suggest that Chikso and Hanwoo have a genetic difference based on the mtDNA cyt b gene as well as their coat color, sufficient for classification as a separate breed.

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