Korean Journal of Microbiology (미생물학회지)

The Microbiological Society of Korea (한국미생물학회)
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Complete genome sequence of Cohnella sp. HS21 isolated from Korean fir (Abies koreana) rhizospheric soil

구상나무 근권 토양으로부터 분리된 Cohnella sp. HS21의 전체 게놈 서열

  • Jiang, Lingmin (Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB)) ;
  • Kang, Se Won (Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB)) ;
  • Kim, Song-Gun (Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB)) ;
  • Jeong, Jae Cheol (Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB)) ;
  • Kim, Cha Young (Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB)) ;
  • Kim, Dae-Hyuk (Department of Bioactive Materials, Chonbuk National University) ;
  • Kim, Suk Weon (Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB)) ;
  • Lee, Jiyoung (Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB))
  • 지앙 링민 (한국생명공학연구원 생물자원센터) ;
  • 강세원 (한국생명공학연구원 생물자원센터) ;
  • 김성건 (한국생명공학연구원 생물자원센터) ;
  • 정재철 (한국생명공학연구원 생물자원센터) ;
  • 김차영 (한국생명공학연구원 생물자원센터) ;
  • 김대혁 (전북대학교 생리활성소재과학과) ;
  • 김석원 (한국생명공학연구원 생물자원센터) ;
  • 이지영 (한국생명공학연구원 생물자원센터)
  • Received : 2019.03.19
  • Accepted : 2019.05.07
  • Published : 2019.06.30
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Abstract

The genus Cohnella, which belongs to the family Paenibacillaceae, inhabits a wide range of environmental niches. Here, we report the complete genome sequence of Cohnella sp. HS21, which was isolated from the rhizospheric soil of Korean fir (Abies koreana) on the top of Halla Mountain in the Republic of Korea. Strain HS21 features a 7,059,027 bp circular chromosome with 44.8% GC-content. Its genome contains 5,939 protein-coding genes, 78 transfer RNA (tRNA) genes, 27 ribosomal RNA (rRNA) genes, 4 noncoding RNA genes (ncRNA), and 90 pseudogenes. The bacterium contains antibiotic-related gene clusters and genes encoding plant cell wall-degrading enzymes.

Paenibacillaceae계의 Cohnella 속은 다양한 환경 속에서 서식한다. 여기에 우리는 한국 한라산 꼭대기의 구상나무(Abies koreana) 근권 토양으로부터 분리된 Cohnella sp. HS21의 전체 게놈 서열을 보고한다. 균주 HS21은 원형 염색체 7,059,027 bp와 44.8%의 GC 함량을 가지고 있다. 5,939개의 단백질 코딩 유전자와 78개의 트랜스퍼 (tRNA) 유전자, 27개의 리보솜 RNA (rRNA) 유전자, 4개의 비 코딩 RNA 유전자(ncRNA), 90개의 위 유전자가 존재했다. 박테리아는 항생제 관련 유전자 클러스터와 식물 세포벽 분해 효소를 코딩하는 유전자를 포함하고 있다.

Keywords

Table 1. General features and properties of the genome sequence of Cohnella sp. HS21

MSMHBQ_2019_v55n2_171_t0001.png 이미지

References

  1. Flores-Felix JD, Carro L, Ramirez-Bahena MH, Tejedor C, Iqual JM, Peix A, and Velazquez E. 2014. Cohnella lupini sp. nov., an endophytic bacterium isolated from root nodules of Lupinus albus. Int. J. Syst. Evol. Microbiol. 64, 83-87. https://doi.org/10.1099/ijs.0.050849-0
  2. Huang Z, Yu YJ, Bao YY, Xia L, Sheng XF, and He LY. 2014. Cohnella nanjingensis sp. nov., an extracellular polysaccharide producing bacterium isolated from soil. Int. J. Syst. Evol. Microbiol. 64, 3320-3324. https://doi.org/10.1099/ijs.0.066456-0
  3. Huerta-Cepas J, Szklarczyk D, Forslund K, Cook H, Heller D, Walter MC, Rattei T, Mende DR, Sunagawa S, Kuhn M, et al. 2016. eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. Nucleic Acids Res. 44, 286-293. https://doi.org/10.1093/nar/gkv1248
  4. Kampfer P, Rossello-Mora R, Falsen E, Busse HJ, and Tindall BJ. 2006. Cohnella thermotolerans gen. nov., sp. nov., and classification of 'Paenibacillus hongkongensis' as Cohnella hongkongensis sp. nov. Int. J. Syst. Evol. Microbiol. 56, 781-786. https://doi.org/10.1099/ijs.0.63985-0
  5. Khianngam S, Tanasupawat S, Akaracharanya A, Kim KK, Lee KC, and Lee JS. 2012. Cohnella cellulosilytica sp. nov., isolated from buffalo faeces. Int. J. Syst. Evol. Microbiol. 62, 1921-1925. https://doi.org/10.1099/ijs.0.032607-0
  6. Kim M, Oh HS, Park SC, and Chun J. 2014. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int. J. Syst. Evol. Microbiol. 64, 346-351. https://doi.org/10.1099/ijs.0.059774-0
  7. Lee KC, Kim KK, Kim JS, Kim DS, Ko SH, Yang SH, and Lee JS. 2015. Cohnella collisoli sp. nov., isolated from lava forest soil. Int. J. Syst. Evol. Microbiol. 65, 3125-3130. https://doi.org/10.1099/ijsem.0.000388
  8. Shiratori H, Taqami Y, Beppu T, and Ueda K. 2010. Cohnella fontinalis sp. nov., a xylanolytic bacterium isolated from fresh water. Int. J. Syst. Evol. Microbiol. 60, 1344-1348. https://doi.org/10.1099/ijs.0.014605-0